Detail information of GWHGAAEX017285/evm.TU.scaffold_80.87
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672180116|ref|XP_008810240.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At2g33760 [Phoenix dactylifera] |
| Swissprot | tr|P93011|PP182_ARATH | 0 | Pentatricopeptide repeat-containing protein At2g33760 |
| trEMBL | tr|A0A067GKI7|A0A067GKI7_CITSI | 0 | Uncharacterized protein {ECO:0000313|EMBL:KDO75967.1} |
| TAIR | AT2G33760 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000084 | 1870553 | 1873120 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017285
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 145 | 170 | 1.2 |
| PF13041.5 | PPR_2 | 171 | 218 | 1.00E-10 |
| PF01535.19 | PPR | 247 | 272 | 0.022 |
| PF13041.5 | PPR_2 | 273 | 320 | 7.70E-09 |
| PF01535.19 | PPR | 350 | 369 | 0.35 |
| PF14432.5 | DYW_deaminase | 448 | 571 | 7.30E-38 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.160 |
| SRR2545915 | Juvenile tuber | 1.530 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.020 |
| SRR5643514 | five period of Gastrodia elata | 1.810 | |
| SRR5643515 | five period of Gastrodia elata | 2.340 | |
| SRR5643524 | five period of Gastrodia elata | 1.710 | |
| SRR5643525 | five period of Gastrodia elata | 0.430 | |
| SRR5643528 | five period of Gastrodia elata | 0.250 | |
| SRR5643658 | five period of Gastrodia elata | 0.060 | |
| SRR5643659 | five period of Gastrodia elata | 2.930 | |
| SRR5643660 | five period of Gastrodia elata | 3.120 | |
| SRR5643661 | five period of Gastrodia elata | 3.440 | |
| SRR5643662 | five period of Gastrodia elata | 2.780 | |
| SRR5643663 | five period of Gastrodia elata | 2.610 | |
| SRR5643664 | five period of Gastrodia elata | 3.060 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.610 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.610 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.170 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.590 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.640 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.770 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.930 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.280 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.690 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.270 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.060 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.060 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.06 |
| Juven | Juvenile tuber | 2.29 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.47 | |
| Mother_Juven | Mother tuber of Juvenile | 0.62 |