Gene detail

Detail information of GWHGAAEX017287/evm.TU.scaffold_80.89

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743803613\|ref\|XP_010926967.1\|	1.06E-98	PREDICTED: uncharacterized protein LOC105049106 isoform X1 [Elaeis guineensis]
trEMBL	tr\|F6HA21\|F6HA21_VITVI	6.00E-60	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49041.1}
TAIR	AT4G03250	1.00E-37	Homeodomain-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000084	1908498	1924379	+

Transcript Sequence
>GWHTAAEX017287 TGCTACTCAGCTCACAGCCAATCTTGAAAGGCGCAGTCTCTGCAAATGGCTAAGCCCTGAGATCTTTGCCCTTCGTCTTCCGCCATGGACGCTTTTCTTCAACTTTACTGGTCAATAAAACTCATTGATGGATAACATTGATGAATACATTCAGGCTTCCAATACTGATTAATGTTCTTGAGAATTATTGAATAGTGGTTTCAGCTCATATTATTGATGATAATTTGTCTTTTTATGGCCTCTTCCTCTTCAATATGGATTTTGCAACTGTCACCATCACTTCTTCAGTATCCCATGAAGCTGTGCAGCAGGAAGGGGAGCCTAGTTCTCATGAAAAAGTAAAGAGAAAACTGAAAACTCCAGCACAAATAGAGGCATTAGAGAAATTTTACAATGAACACAAGTACCCTTCCGAAGCAATGAAATTGGAGTTTGCCAAGAAGATAAACCTGTCTGAAAAACAGGTTTCTGGATGGTTCTGCCACAGAAGACTGAAAGATAAAAAGATATGCCAAGGTGAAATTTATACAAATGGAAAGCAAAAACTCTCTAACAGTGCTATACATGATCGTGTTAGTGGGGTTAAGCAAGAATCCTGTAGCAGCACTAAACAAGCGGAAAGAAATCTTGACTCTAAAGAAGTTGAAAGCAAAATGCATTATGGCTATAAGTCTTCGTTTGGCGTACTGGCATGTGAACCTCGCTATAAACATGCACATGATGGAAATAATCATGTTTACCAAGGTAGATCTTTAGGTAGTAGTTCAGCATCTCATGGCAGCTATTTACAAAGCAATGAAAACCTTTGCGATGCACAACCTTCTAGGTACAAACTTTGGGATGATAGTAGCATGTTAACAAGCAATCAAAACACTGACACCAAGAGTAAAGAACATAGGGTGAATCCTCTGCATTCATTTTTTCAAGATGATAATGAAGCTTCAGCTGTTTCCTTACTAAAATGGAAACTTGGAAGATACTATCATGAAGACGGCCCTCCTCTTGGCTTAGAATTTGATCCCCTTCCACCCGGTGCATTTGACTCACCAGTTCGGGATTCAAAATGCGAACCCTACTATGTTGGAGATATGCAGCACGGATCTTCCAGTTTCTACAGGAGTATCAGTGAAACTAGAGTGTATGATACATATAGTAATGAGAATCTTTCAAGCAATGCTTATCATGAGCAGAGGAGCTTCAAAAAGAGAAAGCTGGGTATTTTTGATGGCAATGAGATCACCGATGTACAGTCAACACCAAATTCTTTTCCTAGTCATGCTCGGTACCAAGCCATTGCCTTAGATGAGGCAAAGAAATCTACGAATCAAACTTCTTATTTGAATGTAAGGAACAATTTGAGATCCTCCAAGTATAAAGCAGAAGTGGGATATGATACTAAAGCTGGCTATAATTTACATCAAAATTATCAGAATTCTAATATTAAAAGCTCATTTTCTTACCCTAATTATGATACTGAAGTTTTCCAGAGTGAAAACTTGCATACGAACTCCTTCGTGGCAGCACAGAAGAAATATAACTCAATTGACCCAGGATACTGGCACCAGCCTCAAAAGCTTCCAAAGGATAATATCGTAAAGGAAACTGCTAAAAAAATTCACCCAGCTTCGCAATCAGGAGTGCTTATAAAAAGCAGAAATAATACTACTGGGAAAGAATATGGTGTCGAACCATGGCGGCAACTGGGTATTGGTAAGGGCTTACACATCCCGGCGCATCAAGTACCATTTATAAGGAATCCATGGAACATTGAATCCCATACCCATCGAGATGTGTCAGAAAGCACGTCCTCATCCTTGGATTGAGAAGCCGTACCAGGTTAAAATTTTGCGATTTCTTACTGGAAGGTGTGTACAGAGAGGCGCATGATCGTGACTAGGAATTCTCAAGCTTTTTGAGACGAAAAAAAAGTTGCATTTGGATATCTTGCTCTAAAATTCAGCAGGAAGGGCCCTTGAAAACACCCTCAGATTTGTTAAGATCAGTGCAAGATTCATGGCCTATTCATTGCACTATTCTTGATGAAATTTTGATGTTCTTAATGCCTGTTCTCCTCAAATTTTGTCGGGATGTCCTGATGCAATTTTTTTTTTAAATGCTGGCATCTGCAGACTGACAGTTAACAGAAGCATGCTTTTCTCAGAAGAAGTGTCAGTCAAACCTCTTGTATATACCATAGAGGTAATGCTCCTTTGATTTCTCAGTCGCTATTTTATTTGTCCTTTTTTTGTATATTTTTATTGTATCACTCACATGTGTAGATGCAGAGTTTTCTTCTTCAACTTTTTTTAAGGTTTGGGGTATTTAAAGTTATGTAGAGTTCTTTCTTAACTTTGCATCTTGTAAATGCTTGGGTGAATCTGAAAAATTGAAATTATGAATATGACCTCGTTTTATAGTACTTGTGCAATAATGGCATTACATTGAACAGCTGTGAGTATCATCAGCGTGACATTATTTTGTGTTGAAATAATAAAAACTTCTTGTAAAGGAATGTATAAATAAGCTAAGAAAACATTTGATTGGGCTACTTATATTGATGAGATCAATGGAAGTTAAACATATCCGTATGATTTGAAATCTGCTACAAAAGTTGTCTTTATGAGTTAG

Network for GWHGAAEX017287

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00046.28	Homeobox	30	84	7.30E-16

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	HB-other

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	Molecular Function	DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	22.820
SRP064423	SRR2545915	Juvenile tuber	22.360
SRP108465	SRR5643513	five period of Gastrodia elata	12.250
	SRR5643514	five period of Gastrodia elata	12.520
	SRR5643515	five period of Gastrodia elata	12.870
	SRR5643524	five period of Gastrodia elata	12.180
	SRR5643525	five period of Gastrodia elata	8.710
	SRR5643528	five period of Gastrodia elata	7.630
	SRR5643658	five period of Gastrodia elata	10.090
	SRR5643659	five period of Gastrodia elata	15.580
	SRR5643660	five period of Gastrodia elata	15.420
	SRR5643661	five period of Gastrodia elata	14.010
	SRR5643662	five period of Gastrodia elata	15.870
	SRR5643663	five period of Gastrodia elata	16.830
	SRR5643664	five period of Gastrodia elata	14.870
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	16.240
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	16.390
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	15.050
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.340
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	16.710
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	21.360
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	15.990
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.850
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.910
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.280
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.350
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.350
SRP279888	Gastro	Gastrodia elata tuber	18.89
	Juven	Juvenile tuber	21.45
	Mother_Gastro	Mother tuber of Gastrodia elata	13.23
	Mother_Juven	Mother tuber of Juvenile	18.75