Detail information of GWHGAAEX017288/evm.TU.scaffold_80.90
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|347756258|ref|YP_004863821.1| | 3.00E-17 | superfamily II DNA/RNA helicase [Candidatus Chloracidobacterium thermophilum B] |
| KOG | KOG1001 | 4.00E-38 | Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily |
| nr | gi|672117620|ref|XP_008782001.1| | 0 | PREDICTED: F-box protein At3g54460 [Phoenix dactylifera] |
| Swissprot | tr|Q9M1I1|FB304_ARATH | 0 | F-box protein At3g54460 |
| trEMBL | tr|V4U415|V4U415_9ROSI | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESR33969.1} |
| TAIR | AT5G22750 | 4.00E-38 | DNA/RNA helicase protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000084 | 1928138 | 1954780 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017288
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00176.22 | SNF2_N | 305 | 967 | 7.80E-95 |
| PF07496.14 | zf-CW | 571 | 614 | 1.00E-13 |
| PF00271.30 | Helicase_C | 1196 | 1290 | 3.70E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SNF2 |
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 22.830 |
| SRR2545915 | Juvenile tuber | 18.920 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.480 |
| SRR5643514 | five period of Gastrodia elata | 14.080 | |
| SRR5643515 | five period of Gastrodia elata | 14.310 | |
| SRR5643524 | five period of Gastrodia elata | 15.490 | |
| SRR5643525 | five period of Gastrodia elata | 14.990 | |
| SRR5643528 | five period of Gastrodia elata | 11.480 | |
| SRR5643658 | five period of Gastrodia elata | 12.260 | |
| SRR5643659 | five period of Gastrodia elata | 14.030 | |
| SRR5643660 | five period of Gastrodia elata | 15.070 | |
| SRR5643661 | five period of Gastrodia elata | 14.670 | |
| SRR5643662 | five period of Gastrodia elata | 12.080 | |
| SRR5643663 | five period of Gastrodia elata | 13.560 | |
| SRR5643664 | five period of Gastrodia elata | 14.620 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 14.670 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 15.880 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.450 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.010 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.730 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 17.770 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.440 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.310 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.070 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.650 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.020 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.020 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.79 |
| Juven | Juvenile tuber | 31.93 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 18.27 | |
| Mother_Juven | Mother tuber of Juvenile | 27.66 |