Gene detail

Detail information of GWHGAAEX017295/evm.TU.scaffold_80.100

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1030	3.00E-87	Predicted Ca2+-dependent phospholipid-binding protein
nr	gi\|695027404\|ref\|XP_009401045.1\|	0	PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q8L7A4\|AGD11_ARATH	6.00E-161	Probable ADP-ribosylation factor GTPase-activating protein AGD11
trEMBL	tr\|M0SYZ7\|M0SYZ7_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P16180_001}
TAIR	AT3G07940_2	3.00E-87	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000084	2183666	2215646	-

Transcript Sequence
>GWHTAAEX017295 ATTTGAAAAGCTTTTTATCCCACCAAATCTTGTGATCCTTCTTCAAGTAAATTAACACCAGTTTTATTGTCCAAATCCTTCGGATCAGATGCTTCTTCATCTCCATTATATTAAAAAGCACATTTTGATCCGTTTTCAAGAAAAGTACGACCCCTTTTTCCATCGCCGGCATTGAAAGTTACCGGAAAAAGGTGGATTCCGGTGAGTTGAGCCATCAAGAAAAATTCAATCTTCCATGAACCCTACAGGTCATTCGAATCCATCAAAAAGGCTTGGAAAGCTGTTAAGTCAACATGGAAATAGAGTTTGTGCGGATTGTGGGTCTCCAGATCCAAAATGGGTGTCATTGAACCTTGGAGTATTTATCTGCATAAAGTGTTCAGGCGTCCATAGGAGCCTTGGAGTGCATATATCAAAGGTCCTATCAGTGAAACTTGATGAATGGACTGAGGATCAGGTTGACTCTTTAATTGATGCGGGAGGAAATGCTGCTGTAAATATGCGATATGAAACTTTTATGTCTGATAATGATGAGAAACCAAAGCCTGATGCTTCGATAGAGGAACGTACAGATTTCATCAGGAGAAAATATGAGCTTAAACAATTTTCAACTAAGCATTCTGCATCTTCAATATCACCTAGTTTGTGCTCATCAACGCCGATCCATGTTCCTATGGACAAGCACTTCGAAAAGCGTTACGCCTGTTTCCGGCATGGGATTGGCAATGCTTTCCGAAACAGTTGGAGGAAAAAGGAATCTGAACAAAAACCAGCCAAAAAGATGATGGGCATGGTTGAATTTGTTGGTTTGATTAAGGTTAATGTAGTTAGGGGTACAAATCTCGCCATTCGGGATGTTATCTCGAGCGATCCTTACGTCATTTTAACTTTGGGATATCAAACTATGAAGACAAGAGTGGTGAAGAGTAATTTAAATCCAGTATGGAATGAAAGGCTGCTGTTTTCAATTCCGGATCCAGTTCCACCTCTGAGACTGCAAGTATATGATAAGGATACCTTCAGCACAGATGACAAGATGGGGGAAGCTGAGATCGACATCCAGCCGCTCGTTGCCGCAGCCAAAGCATATGAGAGCTCTTCGATCGTGGAGCCGATGCAGCTCGGAAAATGGCTCGCCACAGAGGACAACACCTTGGTTAAGGACAGTGTGATCTCCCTCGTCGACGGCACGGTGAAGCAGGAGATCTCCCTCAAGCTTCAGAATGTGGAGAGGGGTCAGTTGGAGGTCGTTCTAGAATGCTTGCCCCTCAGCCAGTAATGTCTCAAAATTTGAATTTTATTCATTTTATTGCATTTATTACCTTCTTCTTTTTTGTTCTAGTGGTATATAATATTGTTTTAGATGTGTGTGTATATATGGGAAGGGGCACATGCTCTTAAAGCAAAGAAGGCATCCTTCAAAGCATGATGTGCTATGTAATACAGAGCAAGATTTTTGTTGTTGTAAAATTGCAAAGCTACAATGTTTGTAACTGACTTGTGTGAAGTTAAGTATATGTGCGACAAAACGTTGTCTTAAAGGATTTCAGTTTTTATGAACTAAATAATATGTTGAATTTGTGAA

Network for GWHGAAEX017295

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module5

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01412.17	ArfGap	12	126	4.40E-38
PF00168.29	C2	192	280	9.70E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12486	SMAP	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0005096	Molecular Function	GTPase activator activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.890
SRP064423	SRR2545915	Juvenile tuber	4.520
SRP108465	SRR5643513	five period of Gastrodia elata	3.750
	SRR5643514	five period of Gastrodia elata	4.870
	SRR5643515	five period of Gastrodia elata	3.980
	SRR5643524	five period of Gastrodia elata	4.220
	SRR5643525	five period of Gastrodia elata	2.330
	SRR5643528	five period of Gastrodia elata	2.640
	SRR5643658	five period of Gastrodia elata	5.110
	SRR5643659	five period of Gastrodia elata	2.520
	SRR5643660	five period of Gastrodia elata	1.100
	SRR5643661	five period of Gastrodia elata	2.890
	SRR5643662	five period of Gastrodia elata	1.970
	SRR5643663	five period of Gastrodia elata	2.700
	SRR5643664	five period of Gastrodia elata	1.060
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.690
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.590
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.660
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.390
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.560
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.760
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.970
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.000
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.290
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.190
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.190
SRP279888	Gastro	Gastrodia elata tuber	0.39
	Juven	Juvenile tuber	1.40
	Mother_Gastro	Mother tuber of Gastrodia elata	1.62
	Mother_Juven	Mother tuber of Juvenile	1.05