Detail information of GWHGAAEX017302/evm.TU.scaffold_80.110
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1987 | 3.00E-158 | Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains |
| nr | gi|743763726|ref|XP_010912059.1| | 8.80E-180 | PREDICTED: BTB/POZ domain-containing protein At1g21780-like [Elaeis guineensis] |
| Swissprot | tr|Q9XHZ8|Y1178_ARATH | 8.00E-159 | BTB/POZ domain-containing protein At1g21780 |
| trEMBL | tr|E0CR58|E0CR58_VITVI | 2.00E-172 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI19012.3} |
| TAIR | AT1G21780 | 3.00E-158 | BTB/POZ domain-containing protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000084 | 2381557 | 2388238 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017302
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00651.30 | BTB | 170 | 270 | 2.60E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TRAF |
| Ubiquitin Family | BTB |
| Ubiquitin Family | 3-box |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10523 | SPOP | Hedgehog signaling pathway | map04340 |
| Hedgehog signaling pathway - fly | map04341 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 28.230 |
| SRR2545915 | Juvenile tuber | 26.670 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 25.660 |
| SRR5643514 | five period of Gastrodia elata | 23.570 | |
| SRR5643515 | five period of Gastrodia elata | 21.180 | |
| SRR5643524 | five period of Gastrodia elata | 20.410 | |
| SRR5643525 | five period of Gastrodia elata | 26.480 | |
| SRR5643528 | five period of Gastrodia elata | 16.930 | |
| SRR5643658 | five period of Gastrodia elata | 24.530 | |
| SRR5643659 | five period of Gastrodia elata | 28.340 | |
| SRR5643660 | five period of Gastrodia elata | 33.480 | |
| SRR5643661 | five period of Gastrodia elata | 31.900 | |
| SRR5643662 | five period of Gastrodia elata | 35.650 | |
| SRR5643663 | five period of Gastrodia elata | 27.710 | |
| SRR5643664 | five period of Gastrodia elata | 39.910 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 27.580 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 24.250 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 19.970 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 34.060 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 20.260 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 26.030 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 24.850 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 21.510 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.700 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.010 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.080 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.080 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 26.78 |
| Juven | Juvenile tuber | 34.21 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 19.56 | |
| Mother_Juven | Mother tuber of Juvenile | 22.00 |