Detail information of GWHGAAEX017303/evm.TU.scaffold_80.112


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08032.00E-36Predicted E3 ubiquitin ligase
nrgi|672118753|ref|XP_008782594.1|1.57E-54PREDICTED: E3 ubiquitin-protein ligase listerin isoform X1 [Phoenix dactylifera]
Swissprottr|Q9FGI1|LTN1_ARATH6.00E-37E3 ubiquitin-protein ligase listerin
trEMBLtr|M0U191|M0U191_MUSAM1.00E-48Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P17840_001}
TAIRAT5G584102.00E-36HEAT/U-box domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008424035042461230+
Transcript Sequence

Network for GWHGAAEX017303

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms27.170
SRR2545915Juvenile tuber31.260
SRP108465SRR5643513five period of Gastrodia elata8.480
SRR5643514five period of Gastrodia elata13.630
SRR5643515five period of Gastrodia elata10.770
SRR5643524five period of Gastrodia elata10.270
SRR5643525five period of Gastrodia elata8.830
SRR5643528five period of Gastrodia elata4.840
SRR5643658five period of Gastrodia elata7.620
SRR5643659five period of Gastrodia elata9.190
SRR5643660five period of Gastrodia elata22.090
SRR5643661five period of Gastrodia elata9.490
SRR5643662five period of Gastrodia elata10.460
SRR5643663five period of Gastrodia elata13.910
SRR5643664five period of Gastrodia elata11.630
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.970
SRR6049655Rhizomagastrodiae_C368-T10_good_115.170
SRR6049656Rhizomagastrodiae_C368-T07_good_18.840
SRR6049657Rhizomagastrodiae_C368-T07_good_113.600
SRR6049658Rhizomagastrodiae_C368-T04_good_123.360
SRR6049659Rhizomagastrodiae_C368-T04_good_123.570
SRR6049660Rhizomagastrodiae_C368-T01_good_116.970
SRR6049661Rhizomagastrodiae_C368-T04_good_122.080
SRR6049662Rhizomagastrodiae_C368-T01_good_110.920
SRR6049663Rhizomagastrodiae_C368-T01_good_115.400
SRR6049664Rhizomagastrodiae_C368-T10_good_110.790
SRR6049665Rhizomagastrodiae_C368-T10_good_110.790
SRP279888GastroGastrodia elata tuber 19.56
JuvenJuvenile tuber19.75
Mother_GastroMother tuber of Gastrodia elata 10.23
Mother_JuvenMother tuber of Juvenile 19.84