Gene detail

Detail information of GWHGAAEX017304/evm.TU.scaffold_80.113

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0803	Predicted E3 ubiquitin ligase
nr	gi\|743782176\|ref\|XP_010921079.1\|	PREDICTED: E3 ubiquitin-protein ligase listerin [Elaeis guineensis]
Swissprot	tr\|Q9FGI1\|LTN1_ARATH	E3 ubiquitin-protein ligase listerin
trEMBL	tr\|M0U192\|M0U192_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P17850_001}
TAIR	AT5G58410	HEAT/U-box domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000084	2463564	2535067	+

Transcript Sequence
>GWHTAAEX017304 ATGGGGCCTTGGTGGTTTGCTCAATTTGATCCAAGTCCTGAGGTTTCTCAAGCTGCTAGGTGTTCGTTTGAGACTCTATTTCCTGCTTCAGAAAAAAGGTTAGATGCTCTTATTTTATGTGTGGATGAGATCTTTGTGTATCTCGACGATAATTTGAAGCTCACGACACATGCTATACCTGATAAAGTTACACCGTTAGATGAGTTGGAAGATATGCATCATCGGGTGATATCTTGTTCATTGATGGCGTTAGCCACACTGATTGAAATAGTACTTAACAAAGAATTTAAATCTAACTCTGAAAATGCTAGCAGTGACCTACGGTCTGCTTCTAGAGCCAAGATAACCGTTACATCTGCTGCTGACAAGCTATTTTCCATGCATAATGGCTTTCTGCATTTTATGAAGCATAAAAGCCCTGCTGTTCGTTCAGCAACCTATTCAGTTTTAACAAGTTATATTAAAAATATTCCTCATGCTTTCAATGAAGGAAACATGAAATCCCTATCAACTGCAATACTTAGTTCTTTTCAAGAGAAGGATATGGCATGTCATTCTTCCATGTGGGATATGATCGTGCTTTTCTCCAGAAAATTTCCTGAAGCATGGCATTCCAACAAAACTCTTAAGACAGTCTTAAATGGACTGTGGCAATTTTTAAGAAATGGATGTTATGGATCACAGAAAGTTTCATACCCAGCTTTAGTGATATTGTTAGAATCTGTTCCTCCTCAAGCTGTTAATAGCGAACAATTTTTTTTCTTATTTTTCCAAAACCTTTGGGCAGGAGGATATTCATTGAACTCAGCTGCAGATAACGCTGTTTTTCTCAAGGCATTTCAAGAATGTTTTTTATGGGTTTTAGATAATGTTGCAAGGTTTTCCAAAAGTGAAGCTGACAAAAGTCTTTTGCCTGTAAAGCTTGTCAATGATACTCTCATAGATCTGCTATGGAATAAATATATTCCAGTGAACGCAAAAAATCAAGGGGAATGTTCCCAGGAAATAATTACTGGGTTTGAAATTGACTCTTTATCAAATGAAATGGCAGTTGAAAAACACAACTATTCTTCAAGTTTTATTCAAGAAATAGGCAAATGTATTATTAATATATTGACACACATTTCGTTGAAAGAATTTAGTTTGCTCCATGGTTTCTTTGCAACCTTTGTGAAGGATTCATTGACTGTTTTACAACATAGAAGCTGTTCAAAAATATTTCAGGAGTATTTGAGAAGGATTATTAACTTCTTTGTTATTATGGGTCAGCTTTCATTGCAGAAAGGTCAAACTTGGCCTTGGGAATTTTTAGCTGGACCACTAATTGCAAGTTCTTTCACAATTATTAAAACCCTTGATTCTATCGATGCCATCAAACTGTTGTCAGTACTTATTGGAATTTTTGATCGAATGACTGTGTTATCACATATTCATGTCTGTAATAAGGGAAGTTGCAGAATTATCTCTACAAGAAACGGTGATTTCAACTTCATAGCAGAGCAGTTCTTGCAAACATTCAGGGATGATTTTGTCCCTTGGTGTCTCCTGTATCAACCTAGTTCTAGTGGTGCAAAACTAGATCTTCTGCTTTCCTTAATTCAAGATGAATATCTATCTGATCAATGGTCTGCAATCATTGTACATTTTACAGAAGTTGACAAATGCTGCAGAGCTGATACTGGAATTATTGATCACGCTAATAACATTAAATCATTTGTGATGTTTTTTGAGAAATTGAGAGATAAAGTTCGTTTCATGAGGATGGAAAATGTTGAAAGGTTTGGTGCAGTTCCCGAACATTGGCATCATGCGTTGCTGGATACTACTGCAGTTTATTTTGTTTGTGAAGCTCCTTGCTTTTGTTTTTCTCATGCTGAACTTCTACGAACGTTACTTGGAGGCTCAATTGAAGATGATCAGATTTGCTTTCTTTCAAGAGCAGCAGTTGTAACTATATTTGAACAGATCGTGAAAATGATGGTTCTCTATCTTAATGCGTCATCGTTTGAATGGACTAGACGCTCATGCTCCTTTTTGTTGTCTTTGGTAACTCTGGATTTGACAGTGATACCAAAGTCCTTTGTTTTTGAGAATCTTGAAACTGTTCAATTTGTTTTTCATGTTCTTGAAGGTAGCTTCTTTGGCTTGAAAATGCTTGATGGGAATGGTGCTTTGATATCTTCTATTTTGGCATCTTTATTTATTATTGAGTGGGAATATAGTATGTCATCAATTACCGATGATGACAACGATTCTGTGAACTATCATGAACCGAAAGTTCATGTATTATCACATACCCAAATCAAAACAGATGATCATATAACCGAGAAGGCTGATGCTAAGCTGTCCCTAGCAAAACAAGTGCATGCAATGCACAATATATTTCTTATGCATTGCTCAAGTATTCTTAACCTGTGCAACTTGTCTGAGTTAAAGACTATATTAATTCAGACCATCAGGTCTATTGTTTCTGAAGTCGGTGAACTACATGCTGATGTAATCTTTTCATTGTGCTCTTCATGGGTGATGGTTTTGCTGAAAGTTACTTGCTCGAATTTTAATGAATTTCAGTGCCTGTTGGATCAGTTGTTATCTGAGACTAATTCTTGGCCGTTGTGGGTTGCACCTCTCTTCCAAGATGGAAGTAGAAGTGCTACTCTTAAGTGCTTGAGATCAAGTGATGGAATAAAGGAGCGAAGCCATGGTAACTTTGTTTCTTTTGTTGACAAACTTATATCAAACCTTGGTGTTGCCAAAGTAATTGCTGGTTGTGGTGAGCAAACACCCGTTGAGGTTGCTTCAAATCAACTATTTTACTCTCGCATGTGGCTTGCTGCTGAATTACTTTGTACATGGAGTTGGAAAGGGGGGAATGCATTGAATTCATTGATTTTGCCTTTATCCGAGCATGTAAAAGATGACAACTCAATGAGCGGAGTCAAGATAATTTCTTCTATGATGAGCATCCTTTTTGATGGTGCTCTCATACATGGTGCCAATGATCATTGGATTGTTTTCTGCTCTTGGATCACTTCAGATGGTGGTGTTGACAAGATTGAAAATTTGTTCTTACGTGCACTTGTTGTGTTATTACATACCTTCCTTGTTAATGAAACTATGAGGGAAAGGCTTGTTGCAACTGATTTCATTGAATATATTCTTGGCAAACTTTACTTTAATGGTCATGTAAATATAGCTTGTCTGAGGATTATTCCTCATGTACTTAGTTACGTTGTTCGGCCATTGGTTTTTGAAAGGACAGAATTTGATGGATTCACAAAAGATGCTTCCCTTGTTTCTTTCAAGTCTTCTGAACTTTATGACAGTATTATAATTTGGCTTGATAATGCTGCTAATTTTCCTCCTTTGCATCTGTTAGAAACTGGAAATAAAGATTGTGTAGAATGGATTCAAGCTATCTTAGCCTGCTATCCTTTAAGTTCACAAGGAGGAATTGGGAAATTGAAGTTGATGGTTTCTAGAAAGATCAGCAAAATGGAGCAAGAGTTATTGCTGATTTTGTTTCGAAAACAAAGAAATGCTGCTGCTTCAGCTAAAGATAAGATATCTGCTATGCATTCACCGTCCTCTTCTAGTTCTATTTTTCCTATGCTTGAAGATGTTATTATGGCAAAGCTAACGGCTATTACAGTCGCATATTGCTGGGAGGAGTTGGCAGAAGAAGATTGGAGTTTTGTGATGGCTGAATTGCATAAATGGATTGAACCATCAATTTTGATAATGGAGGAGATTGCAGAGAGGGTAGATGATGTTCTGTCAAGTGAAACAACTCATAATATGGAAGTTATTTTGAAGAAGCTTGAAAAAATTGTGCAGCGTTTTGATCCTTTCTTAGTGAGTCTTTGTGCTACTTCTTTAGTAACCTTTTCTCTTTTCTCTGAACTCCTTGAACTTGAAAATGCTGATAGCATTGAAGCTTTTCAATCTATAAAGCATGGAATTTGGCTCCAAGTTAAGGATCAAATTATGGAAAATGTTCTCCGCTTATTTCTTACAACTGGTGTTGTTGAGGCTATTGCAGAGTCGTTTAGCAAGGAGGCATCATCAATAATTGCATCAAATAGGCTAGATTATTCTTTATTTTGGTCAATAGTTGCATCATCTGTCATAAAGACACCGGAATGTGCTAGAAATAAAGCAGTGGAATCAATGGAACTTTGGGGTCTTAGCAAGGGACCAATAAGTTCTTTGTACGCAATTCTTTTTTCTTCCAAGCCAATATGCTCTCTGCAACTAGCTGCTTATATATTTCTTTCAACCGAACCCGTTATTCATTTGTCAATTTTGAAAGATGACTTCCAAAACAGCAATGGTAAAACTAGTCAGGAACGTTTGTTCACCTCTATGGATGGATTTTCAGAACAATCTTTGTGTTTAAGGGATGAAATCTCCTGTCTAATTATGAAGCCAGCTGAATATTCTGAAAAGATATTGACTGGCATTGATTGTATAAATTATTTTCTTTCTTGGGCTTTATTGCTCACTCACTTACATTCACTGCCATCTTCATCCACAACAAGAGAAAGATTAGTACAGTTTATACATTATTCTATTCGTTCAACAATACTAGACTGTTTATTCCAACATATACCATTGAAAGAATTGGGGGCTAGTTTGAAGAAGAAAGATGCAGAGCTTTCTGGTGTTGCATTGCAGGCTGCAAATGCTGCCATGCATGTTACGAGCACAGGATCTTTGTTGTTATGCATGGAATCAGTTTTTCCAATTGGAACTGGACATATGGCTTCACTTGCTGGTTCAATATATGGAATGATGATCCAGGTCCTACCTTCTTATGTCCGTAATTGGTTTAATAGTCTGCGTGATCATTCTATGTCATCTGCTATCGAATTCTTCACAAAGATTTGGTGCAGTCCTTATCTCATTTCAAATGAGTTATCTCAGGTTAAGGAAATAGTTGTTGCTGATGACAGCTTATTCTCCCTTTATGTAAATAAATCTGCTCACGAGATTATTGCAACATATAAAAAGGAGAATACTGGAATAGATCTGGTGATACGGCTGCCCAGTTGTTACCCTTTGCAGCCTGTGGTTGTTGAGAGTACAAGGAGTCTTGGCATAAATGAATCCAAGCAGAGGAATTGGTTGCTTTCCTTGACCGTGTTTGTACGCAATCAGAATGGGGCCATTGCTGAGGCGATTCGCAAATGGAAGAGCAATTTTGACAAGGAATTTGAGGGAATCGAGGAGTGCCCAATTTGCTACAGCATCAGCCATACATTCGATCACAGCCTTCCACGCAAATCTTGCAGCACCTGCAAACACAGGTTTCATTCTGCTTGCCTCTTCAAGTGGTTCTCAACTTCTCACAAATCTACATGCCCATTGTGCCAGACTCCATTTTGA

Network for GWHGAAEX017304

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX017304
MGPWWFAQFDPSPEVSQAARCSFETLFPASEKRLDALILCVDEIFVYLDDNLKLTTHAIPDKVTPLDELEDMHHRVISCSLMALATLIEIVLNKEFKSNSENASSDLRSASRAKITVTSAADKLFSMHNGFLHFMKHKSPAVRSATYSVLTSYIKNIPHAFNEGNMKSLSTAILSSFQEKDMACHSSMWDMIVLFSRKFPEAWHSNKTLKTVLNGLWQFLRNGCYGSQKVSYPALVILLESVPPQAVNSEQFFFLFFQNLWAGGYSLNSAADNAVFLKAFQECFLWVLDNVARFSKSEADKSLLPVKLVNDTLIDLLWNKYIPVNAKNQGECSQEIITGFEIDSLSNEMAVEKHNYSSSFIQEIGKCIINILTHISLKEFSLLHGFFATFVKDSLTVLQHRSCSKIFQEYLRRIINFFVIMGQLSLQKGQTWPWEFLAGPLIASSFTIIKTLDSIDAIKLLSVLIGIFDRMTVLSHIHVCNKGSCRIISTRNGDFNFIAEQFLQTFRDDFVPWCLLYQPSSSGAKLDLLLSLIQDEYLSDQWSAIIVHFTEVDKCCRADTGIIDHANNIKSFVMFFEKLRDKVRFMRMENVERFGAVPEHWHHALLDTTAVYFVCEAPCFCFSHAELLRTLLGGSIEDDQICFLSRAAVVTIFEQIVKMMVLYLNASSFEWTRRSCSFLLSLVTLDLTVIPKSFVFENLETVQFVFHVLEGSFFGLKMLDGNGALISSILASLFIIEWEYSMSSITDDDNDSVNYHEPKVHVLSHTQIKTDDHITEKADAKLSLAKQVHAMHNIFLMHCSSILNLCNLSELKTILIQTIRSIVSEVGELHADVIFSLCSSWVMVLLKVTCSNFNEFQCLLDQLLSETNSWPLWVAPLFQDGSRSATLKCLRSSDGIKERSHGNFVSFVDKLISNLGVAKVIAGCGEQTPVEVASNQLFYSRMWLAAELLCTWSWKGGNALNSLILPLSEHVKDDNSMSGVKIISSMMSILFDGALIHGANDHWIVFCSWITSDGGVDKIENLFLRALVVLLHTFLVNETMRERLVATDFIEYILGKLYFNGHVNIACLRIIPHVLSYVVRPLVFERTEFDGFTKDASLVSFKSSELYDSIIIWLDNAANFPPLHLLETGNKDCVEWIQAILACYPLSSQGGIGKLKLMVSRKISKMEQELLLILFRKQRNAAASAKDKISAMHSPSSSSSIFPMLEDVIMAKLTAITVAYCWEELAEEDWSFVMAELHKWIEPSILIMEEIAERVDDVLSSETTHNMEVILKKLEKIVQRFDPFLVSLCATSLVTFSLFSELLELENADSIEAFQSIKHGIWLQVKDQIMENVLRLFLTTGVVEAIAESFSKEASSIIASNRLDYSLFWSIVASSVIKTPECARNKAVESMELWGLSKGPISSLYAILFSSKPICSLQLAAYIFLSTEPVIHLSILKDDFQNSNGKTSQERLFTSMDGFSEQSLCLRDEISCLIMKPAEYSEKILTGIDCINYFLSWALLLTHLHSLPSSSTTRERLVQFIHYSIRSTILDCLFQHIPLKELGASLKKKDAELSGVALQAANAAMHVTSTGSLLLCMESVFPIGTGHMASLAGSIYGMMIQVLPSYVRNWFNSLRDHSMSSAIEFFTKIWCSPYLISNELSQVKEIVVADDSLFSLYVNKSAHEIIATYKKENTGIDLVIRLPSCYPLQPVVVESTRSLGINESKQRNWLLSLTVFVRNQNGAIAEAIRKWKSNFDKEFEGIEECPICYSISHTFDHSLPRKSCSTCKHRFHSACLFKWFSTSHKSTCPLCQTPF

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	37.200
SRP064423	SRR2545915	Juvenile tuber	40.280
SRP108465	SRR5643513	five period of Gastrodia elata	11.940
	SRR5643514	five period of Gastrodia elata	13.460
	SRR5643515	five period of Gastrodia elata	13.840
	SRR5643524	five period of Gastrodia elata	13.910
	SRR5643525	five period of Gastrodia elata	11.310
	SRR5643528	five period of Gastrodia elata	7.400
	SRR5643658	five period of Gastrodia elata	9.990
	SRR5643659	five period of Gastrodia elata	11.290
	SRR5643660	five period of Gastrodia elata	16.470
	SRR5643661	five period of Gastrodia elata	12.340
	SRR5643662	five period of Gastrodia elata	11.350
	SRR5643663	five period of Gastrodia elata	13.500
	SRR5643664	five period of Gastrodia elata	12.240
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	18.130
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.120
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	15.700
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	20.310
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	26.370
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	30.920
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	20.870
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	25.400
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.690
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	17.810
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	13.590
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	13.590
SRP279888	Gastro	Gastrodia elata tuber	27.51
	Juven	Juvenile tuber	27.25
	Mother_Gastro	Mother tuber of Gastrodia elata	21.10
	Mother_Juven	Mother tuber of Juvenile	25.81