Detail information of GWHGAAEX017305/evm.TU.scaffold_80.114
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|46446032|ref|YP_007397.1| | 0 | D-alanine--D-alanine ligase [Candidatus Protochlamydia amoebophila UWE25] |
| nr | gi|672118757|ref|XP_008782597.1| | 0 | PREDICTED: uncharacterized protein LOC103702084 isoform X1 [Phoenix dactylifera] |
| trEMBL | tr|W1PE80|W1PE80_AMBTC | 0 | Uncharacterized protein {ECO:0000313|EMBL:ERN05360.1} |
| TAIR | AT3G08840 | 0 | D-alanine--D-alanine ligase family |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000084 | 2548238 | 2610233 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017305
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01820.20 | Dala_Dala_lig_N | 94 | 208 | 4.30E-19 |
| PF07478.12 | Dala_Dala_lig_C | 258 | 465 | 3.80E-15 |
| PF01820.20 | Dala_Dala_lig_N | 502 | 674 | 2.40E-20 |
| PF07478.12 | Dala_Dala_lig_C | 827 | 931 | 1.20E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0046872 | Molecular Function | metal ion binding |
| GO:0008716 | Molecular Function | D-alanine-D-alanine ligase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.670 |
| SRR2545915 | Juvenile tuber | 11.680 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.360 |
| SRR5643514 | five period of Gastrodia elata | 15.160 | |
| SRR5643515 | five period of Gastrodia elata | 13.490 | |
| SRR5643524 | five period of Gastrodia elata | 15.670 | |
| SRR5643525 | five period of Gastrodia elata | 4.870 | |
| SRR5643528 | five period of Gastrodia elata | 4.360 | |
| SRR5643658 | five period of Gastrodia elata | 4.570 | |
| SRR5643659 | five period of Gastrodia elata | 7.300 | |
| SRR5643660 | five period of Gastrodia elata | 7.660 | |
| SRR5643661 | five period of Gastrodia elata | 5.260 | |
| SRR5643662 | five period of Gastrodia elata | 3.020 | |
| SRR5643663 | five period of Gastrodia elata | 3.660 | |
| SRR5643664 | five period of Gastrodia elata | 3.670 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.430 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.010 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 14.620 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.130 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.140 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.350 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 13.860 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.980 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.050 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.690 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.340 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.340 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.06 |
| Juven | Juvenile tuber | 16.16 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.62 | |
| Mother_Juven | Mother tuber of Juvenile | 13.32 |