Gene detail

Detail information of GWHGAAEX017306/evm.TU.scaffold_80.115

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695029925\|ref\|XP_009402403.1\|	8.33E-135	PREDICTED: uncharacterized protein LOC103986200 isoform X1 [Musa acuminata subsp. malaccensis]
trEMBL	tr\|A2WWJ2\|A2WWJ2_ORYSI	1.00E-123	Putative uncharacterized protein {ECO:0000313\|EMBL:EAY76338.1}
TAIR	AT5G05350	2.00E-107	PLAC8 family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000084	2611568	2613475	+

Transcript Sequence
>GWHTAAEX017306 TAAAAACAATTTCCCTATTTATCTTCCAATTATTGAACTTTGTACTCTCTACGTTCCATCTCAGTAAATATGTAACTAATAAAAATAAAATTTATAATGTTAGATATCAAATTTAAAACAGTAACTATTATATCATTTCAAGTCGTGCCTGAAATTTCTCGTAAGAAATTCCACTTGTTATCAAAACCTACCTCTATAATTCGCCGTCTCTTTTCTAAGAATTTTTTTTTTCTCGCTCCTTCTTTCCAAATGCTATTTTTTCCTTCCCATCTTGGCAAGAAATCTTCTGTTTCTCAACAGAGCAATGATGCAGATCAAAGCTTCCTCTCATCTGAATCGCATGCCGCAGCTCCTTCCCTTCCTCTTCAGATTCGGTGCCTGCAAATCGACTTTTCATCCCCCAAAACAGGATCTGTCGCAGGCAGAGGCTGCGGAAGAACCCTTTCAGGTTTCCTCAGAGTCTTCCTCTCCGGAAATTGGCAAAGGGAGGACATAAATTTTGCTTCTTTTATTAGAAAATGGATCCAACACCCAATGAACATCGCCCTCCTTGTTTGGTTCATCTTCGTGGCAGCTTCTTCCACCATGCAAGGGCTTCTCCTTCTCGGAATGCTGAACAAAAAATTCCCCCAAAAGGATTCCAGGAACCGATGGATTGAAATAAACAATCAGGTTCTCAATGCTCTGTTCACTCTGATGAGCCTTTATCAGCATCCAAGTCTTTTCCACCACTCAGTTCTTCTGTGCAGAGGAAGAGGAGAAGACATGAAACAGCTGAGAAATATCTACTGCAAAAATAGAGCTAAGAAGGGAGAACAAGGTCATATTTTGGCGCTTGTGATCCTCCTCCACATCACATGCCTGTCCCAATACGTGCTGTGCGGGCTCTACTGGGGTTACACAATAAACACCCGGCCTGAATTTTATGAAAATTTGTTCAACGTCGTTGGATTCATAGCTCCAGTCATGGCCGGAGCTTATGCTATGTACGGCCCTCTGGGGAGAGAGGAGGACCACTCTGGTGTCAACAAAGAAGAAAACAGCGAAAGAGAGATGCTTGAACTTAAAAAGCTGAGAACTTTTGTCCATCGAGAGTGGAAAGGAGGGATTTTTGATTGCAGGGATGATATTTCCGTGGGACTGCTTTCGTTCTTCTGCAGCTTATGCGTCTTTGGATGGAATATGGAAAGGCTGGGGTTTGGGAACATGTATGTCCACATCTCCCTCTTCTTCCTGCTGTGCTCTGCCCCTCTGTGGATTTTTGGCATTTCTGCCATGCATATAGGCAATGAGTGGGTGAGAAACTTGGTGGGGGGATCAGGAATGCTTTTATCTGTGTGCGGATTGATGTATGGAGGATACTGGAGGGTGAAAATGAGGGAAAGATTCGAGCTTGGGGGAAATGGAGGCTGCTGTAGATCGGAAACGGCGATGGATTATCTCAAGTGGGTGTTCTGTTGCTGGTGCGCGTTGGCGCAGGAGGTGAGAACTGGAAATTTCTATGGGTTTGGAGGAGAAGAAGAAGAAGAAGAAGAGCTGTTGATTTGTCCTTTGCCTCGGGAGGGCCGAGTGAGGAATGGAGAAGAAGAGGGCTTGATCTGTCATCCAAAGAGGCCTCCTTTTCAGCAGTTGATGCAGGGTAGTATGTGAGTGGATAATTTTGAAGAGGATGAGCTCTGATGCAGAGAAATTGTAGAGTTTAATCTGAAATGAATTTTTTTGTTTTTGTTGTGTACAAGTAAAAATAACAGCTGCTATGTTGCTGAATAATTTTTTTCTCAAAGCCTTTTTAAAGTAGATTGAAGTATTGTCTTCATATTTTTTTAAAGTTAATCAACACATTGGGATTAACATTAATTGCTATAAGGTTGTCATTATAGGGAATGATGAAATACGTTCTTTGGCCAA

Network for GWHGAAEX017306

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF11204.7	DUF2985	141	218	8.90E-26
PF04749.16	PLAC8	334	464	5.10E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	8.920
SRP064423	SRR2545915	Juvenile tuber	7.990
SRP108465	SRR5643513	five period of Gastrodia elata	6.650
	SRR5643514	five period of Gastrodia elata	5.950
	SRR5643515	five period of Gastrodia elata	10.730
	SRR5643524	five period of Gastrodia elata	7.280
	SRR5643525	five period of Gastrodia elata	12.120
	SRR5643528	five period of Gastrodia elata	22.790
	SRR5643658	five period of Gastrodia elata	12.650
	SRR5643659	five period of Gastrodia elata	13.300
	SRR5643660	five period of Gastrodia elata	9.060
	SRR5643661	five period of Gastrodia elata	10.670
	SRR5643662	five period of Gastrodia elata	13.220
	SRR5643663	five period of Gastrodia elata	10.880
	SRR5643664	five period of Gastrodia elata	10.510
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.130
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	3.700
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	4.030
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.520
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.420
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.360
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.990
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	3.550
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	5.180
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	7.260
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	4.210
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	4.210
SRP279888	Gastro	Gastrodia elata tuber	9.99
	Juven	Juvenile tuber	5.04
	Mother_Gastro	Mother tuber of Gastrodia elata	24.41
	Mother_Juven	Mother tuber of Juvenile	11.05