Detail information of GWHGAAEX017309/evm.TU.scaffold_80.118


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|145301242|ref|YP_001144082.1|5.00E-25micrococcal nuclease (SNase-like) [Aeromonas salmonicida subsp. salmonicida A449]
nrgi|743782107|ref|XP_010921062.1|2.18E-156PREDICTED: uncharacterized 38.1 kDa protein-like isoform X2 [Elaeis guineensis]
Swissprottr|Q39635|Y38K_CAPSE1.00E-141Uncharacterized 38.1 kDa protein
trEMBLtr|A0A061FJY4|A0A061FJY4_THECC3.00E-146Uncharacterized protein isoform 1 {ECO:0000313|EMBL:EOY17645.1}
TAIRAT2G404101.00E-94Staphylococcal nuclease homologue

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008426529732655846-
Transcript Sequence

Network for GWHGAAEX017309

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00565.16SNase2213165.90E-27
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0004518Molecular Functionnuclease activity
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms35.330
SRR2545915Juvenile tuber34.510
SRP108465SRR5643513five period of Gastrodia elata18.320
SRR5643514five period of Gastrodia elata20.130
SRR5643515five period of Gastrodia elata20.000
SRR5643524five period of Gastrodia elata26.690
SRR5643525five period of Gastrodia elata75.160
SRR5643528five period of Gastrodia elata55.950
SRR5643658five period of Gastrodia elata94.830
SRR5643659five period of Gastrodia elata23.290
SRR5643660five period of Gastrodia elata36.470
SRR5643661five period of Gastrodia elata27.810
SRR5643662five period of Gastrodia elata36.170
SRR5643663five period of Gastrodia elata23.430
SRR5643664five period of Gastrodia elata40.770
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_115.760
SRR6049655Rhizomagastrodiae_C368-T10_good_116.090
SRR6049656Rhizomagastrodiae_C368-T07_good_117.910
SRR6049657Rhizomagastrodiae_C368-T07_good_117.360
SRR6049658Rhizomagastrodiae_C368-T04_good_132.010
SRR6049659Rhizomagastrodiae_C368-T04_good_131.900
SRR6049660Rhizomagastrodiae_C368-T01_good_117.340
SRR6049661Rhizomagastrodiae_C368-T04_good_120.330
SRR6049662Rhizomagastrodiae_C368-T01_good_113.750
SRR6049663Rhizomagastrodiae_C368-T01_good_118.330
SRR6049664Rhizomagastrodiae_C368-T10_good_116.430
SRR6049665Rhizomagastrodiae_C368-T10_good_116.430
SRP279888GastroGastrodia elata tuber 42.43
JuvenJuvenile tuber12.59
Mother_GastroMother tuber of Gastrodia elata 86.55
Mother_JuvenMother tuber of Juvenile 17.35