Gene detail

Detail information of GWHGAAEX017313/evm.TU.scaffold_80.124

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4197	2.00E-157	FOG: PPR repeat
nr	gi\|743788398\|ref\|XP_010922654.1\|	0	PREDICTED: pentatricopeptide repeat-containing protein At4g19440, chloroplastic-like [Elaeis guineensis]
Swissprot	tr\|Q940A6\|PP325_ARATH	6.00E-158	Pentatricopeptide repeat-containing protein At4g19440, chloroplastic (Precursor)
trEMBL	tr\|M0RUV2\|M0RUV2_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P23720_001}
trEMBL	tr\|M0RUV2\|M0RUV2_MUSAM	6.00E-68	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P23720_001}
trEMBL	tr\|M0RUV2\|M0RUV2_MUSAM	9.00E-64	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P23720_001}
trEMBL	tr\|M0RUV2\|M0RUV2_MUSAM	4.00E-37	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P23720_001}
TAIR	AT4G19440	2.00E-157	Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000084	2735090	2746878	+

Transcript Sequence
>GWHTAAEX017313 TTAATCGCATATATTTTCATCTAATTACAAACTAACCCTTAATGGAGTTAATCAAAGCTTCTTCCTCTCAAGCCTCTTGCCCCTCCGCCGGCGGCAGATTACCCCCATAACATTGGCATGATCCGTCTCCGCTCCGCGCGGCAGCCATCGTCTTCCCTCCTTCAGATCTTCACAGTCTGCTATTCCTCAAACAACGGCTCTTCCTCCTCTGCTGACGGTTCTTCTTCTTCCTCCACCTCCGCCGCTGCAGAATCTCGGGACTTCCGTCTCCTTTTCTCTCAATCCTCCTTCAATTCTTCGCTCTGCCGTCGGCTTCTCTCGCGCCTCTCGCCCCGTCGATGCGAGCTCTTGTTCACCTCGATCCTTCCCTCCGTTCCCGTCTACACTGCCCTCCGCTTCTTCTCCTTTGCCTCGGATCAATGCGGTTTTCGTTTTACTCTCCATTCGTACTCTCTTCTCCTCCACACCCTCCTCAGCTCCGGCAAAGTTTTGCCCGCTCGCCTCCTCCTCGTCCGCCTCCTCGATCCCTCCAGCTCGCTCCCTGTCGTCTTTCATGATCAGGATCGCCGTCTTCATGATCTGATCGAAGCGCTCGCTGTATCACACGCTCCGCAGGAAACTGTCCTTATGGCGATGGACATTTTGGTGCACGCCTGCGCCACTCAATTCTCCCATTTCCCGAGGCTCGCCGTGGATGCGTTCCTATTGATCATCGCTCGTGGGATTTGCCCGACGCATAAAACGTGCGGTTTTCTTATCTCTTTTTTGGTTCGAGCCAAGCGGGATGGCGATGCCTTTAAGGTGTTCGATGAAATGCGAAAGTTTATTTCTCCCGACGTCTATTCTTACACACCTCTGATTGACGTGCATTGCAAGATTGGCAATATTGAGGATGCTATTTCCATGTTTAGAGAGATGAAGATTGCTGGGGTTTCTCCCAATGTTGTTACATACAATGCACTTCTTGATGGGTTGTGCAGGAAAGTGATGTTGAAGGAAGCCATGGCTTTAAAGGAGGAAATGGAAAAGAGTTCTGTGGAGCCAACTGTTATGACTTATCGCTCTATAATAAATGGGCTTGTTAGAGAGGATAGGTATGAGGATGTAGGCTGTCTTTTCAAGGAGATGATAGAGAGAGGAATTGCTCCTAATGAGTTTATTTACAATACCCTGGTTAATGGACACTCTAGAATGGGTCGCCTTGAAGAAGCTTTGATGCTAAAGGATGAAATGAGGTCTAAAGGGGTAGAGCCAAATAGGGTTACTTACAATATGATTATGAATGGTTTGTGCAATGCAGGAGAGATTGAACGGGCAGAGTGTCTGTTTAAGGAAATGCTGAAGAGCAAAATTCCTTTAGTTGCTGGTGATTTTAACTCCATCATTTCCAGGGTTTTGAGATCAAATTCAAGACTTGATTTTGCAATCTTGCTATTTTCAGAGATGTCTCAAAAATTTAGGCCGAATGATTGCCTTTTGACAGTACTCTTAAGCGAGTTGTGTAAGAGTGGAAGGCATCATGAAGCTGTTGATATTTGGCGCAAGTTGTCAGAGAACGGTTTTTTTCCAAACATAATAACTTCTAATGCTTTAATTAATGGGCTTTGCAAATCTCGAAATATGAAAATTGCAGTTGGTGTTCTCAAATTGATGGTTGAAAAAGGAATGGCATTTGATAACATAACATTTAACATCCTTATATCTGGAAGTTGTAAAGAGGGAAGATTGGAAGAAGCATTTAAACTTAAAGAAGTGATGGTTGAAAGAGGCCTCAAGCCAGATAATTTTACTTATAGTACACTGATGCAGGGGTTGTGCTATTCAGGAAAAATAGATGATGCCATTTCAATTTTGATTGGATTTAGGAAGGAGGGTTTGGTCCCTGATCTTTTCAGCTGCAGTATGATAATTGAAGGTTATTGCAAGGCCAATGAAATGGATAAGGGAAAACTGTTCTTAAAAGAATTGGATAATTGGAATTTAAAACCGAACCATGTCTTATATAATTCATTTATTGGTGGATATTGCAGGAATGGAAATATAAAGGAGGCATCCACTCTTATAAATGAAATGAAAGATAAAGGAATTGCACGAACAGAAGTTACTTATGGTATTTTGATGCATGGATTGTGCAGCAAAGGCTGTGTGGAAGAAGCCAGAGATGTTCTCAAGATAATGAGACACGATGGCATAGCACCAAATGTTGTATGCTATACTTTACTGGTTGATGGATATTGTAAAATTGGCAACGTTGAAGCAGCATGCAGCATATTTGAGGAAATGAGCGCTAATGGTATAGATCCAAATAAGTTTACTTACACTGCCTTGATGAATGGATATTGCAAAATCGAAAACCTTATAGAAGCAACAAACCTTTTTGATGAAATGGTAGCTCGTGGAATTGTCCCAGATGCTGCTGCTTACAGAGTACTAATGGTGGGATTATGCAAGGAAGGCAGCATGGAGGAGGCTTTTAGAATATCTCAACTGATGCCTAAACAATGCCAGATGTTGGATCATATCTCTTCAAATGCAATGGGGATGTCTACAACTGCAGTTGGAGTAGAATATACTGCCGTTGGCAATGACTTCTTTCATTGCAGCATGGTTGGTCAGCATATTAATCTATTTTCACCTGACAAGTCATCTGACTTTGAGCTATTGCTGTCAAAGGAAGGTTTGAACGTGCAGTAATTTGCTAAGGCTTGAAAGAGTTATGATGGTGCTGATTATCTGTGTCTAAACACGAGAACTATGGTTCATAACAGTGTGATTTTACCCATGCTATCCTACAATTCTTTGGATAGATTTTGTTATCTGGGAAGGCCAGCGTCTGTAAATATTACTTGAACTGGTGTTATCAGGCAAAAGAGAACCCTAGTGACAAATAATCCTTTGTCTTAAAGTTTATGAAAGCTTCAAGTGCTAGTCAACACCGATTCTCATATTCATGTTGAATGATGAAGCACAAGTTGCAACTTTGACAACAATGCAACATACATATATTCCTCGTTTGATGGTGTAGATGGCTTCCTTCATCACAAACAACACTTGATTACTTAGCTGTTAACCTCTCTGATGTCTTCTAGCCCTAATTTATCCACTCAACAGTTGCAAGAGCCACATTTCAATTTTTTTTCTATTTTGAACAAATCCACATTCACGTGCATAGTACAATGTGAACAAGTGGTTTCAATTTATTCATGTGTGAAAGCCCATGAATTGACACACCTGGTTGCTCTTAAATTGATTATGTCAGTTCATCCATACAGACCAACCAACCACGCTTTAGCTCACTTACAACCGTGGTCTACCTATAATTCAGTCCAGCTTACTGTTCTAAGATATTCAGCTCTAAATCCTTGCAGAAAATAGTTCAGGAAGACGTTCAAAGGTATATAATAAATGAAATTTATGGTGATGATTTCAAGTGTTTGTGCTGCACTTTTTCATTCGGGGCTTATTATTGGTTCACCTAATAAGAAAATGAGGTAGTATTTCATTTAATTATAGAATTTTTTTGGGAATTATTCTCAGTATTTTCTTAACCCTAACAAATGGCACCGCACCTATTGGTATAGTCCTGTAAATAATTAGATGCCGGTTAATGTTCATTTTTGAATGCTTCAAATAAATAAAATTGCTAGTGGTGCTTTAGCCCCGTGATTCAAGCTCA

Network for GWHGAAEX017313

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01535.19	PPR	210	235	0.6
PF13041.5	PPR_2	239	288	1.30E-16
PF01535.19	PPR	313	342	8.60E-05
PF13041.5	PPR_2	344	393	3.60E-16
PF13041.5	PPR_2	450	498	4.80E-09
PF13041.5	PPR_2	520	567	1.50E-17
PF12854.6	PPR_1	586	611	1.50E-05
PF13041.5	PPR_2	624	673	2.80E-15
PF13041.5	PPR_2	694	743	1.30E-17
PF01535.19	PPR	768	788	0.17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.610
SRP064423	SRR2545915	Juvenile tuber	2.940
SRP108465	SRR5643513	five period of Gastrodia elata	1.840
	SRR5643514	five period of Gastrodia elata	1.990
	SRR5643515	five period of Gastrodia elata	1.910
	SRR5643524	five period of Gastrodia elata	2.190
	SRR5643525	five period of Gastrodia elata	1.040
	SRR5643528	five period of Gastrodia elata	1.120
	SRR5643658	five period of Gastrodia elata	0.860
	SRR5643659	five period of Gastrodia elata	2.530
	SRR5643660	five period of Gastrodia elata	2.260
	SRR5643661	five period of Gastrodia elata	2.190
	SRR5643662	five period of Gastrodia elata	2.480
	SRR5643663	five period of Gastrodia elata	3.000
	SRR5643664	five period of Gastrodia elata	1.760
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.980
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.810
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.090
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.250
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.670
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	3.230
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.470
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.950
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.990
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.430
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.230
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.230
SRP279888	Gastro	Gastrodia elata tuber	2.57
	Juven	Juvenile tuber	2.18
	Mother_Gastro	Mother tuber of Gastrodia elata	0.90
	Mother_Juven	Mother tuber of Juvenile	1.45