Detail information of GWHGAAEX017314/evm.TU.scaffold_80.125
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|374317300|ref|YP_005063728.1| | 1.00E-35 | prephenate dehydrogenase [Sphaerochaeta pleomorpha str. Grapes] |
| KOG | KOG2380 | 5.00E-86 | Prephenate dehydrogenase (NADP+) |
| nr | gi|720027276|ref|XP_010264524.1| | 5.72E-118 | PREDICTED: arogenate dehydrogenase 1, chloroplastic-like [Nelumbo nucifera] |
| Swissprot | tr|Q944B6|TYRA1_ARATH | 2.00E-86 | Arogenate dehydrogenase 1, chloroplastic (Precursor) |
| trEMBL | tr|D7T4H8|D7T4H8_VITVI | 2.00E-116 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI25410.3} |
| TAIR | AT5G34930 | 5.00E-86 | arogenate dehydrogenase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000084 | 2749326 | 2755451 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017314
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02153.16 | PDH | 64 | 231 | 1.40E-15 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K15227 | TYRAAT | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Biosynthesis of amino acids | map01230 | ||
| Tryptophan metabolism | map00380 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0006571 | Biological Process | tyrosine biosynthetic process |
| GO:0004665 | Molecular Function | prephenate dehydrogenase (NADP+) activity |
| GO:0008977 | Molecular Function | prephenate dehydrogenase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.260 |
| SRR2545915 | Juvenile tuber | 2.800 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 5.630 |
| SRR5643514 | five period of Gastrodia elata | 7.300 | |
| SRR5643515 | five period of Gastrodia elata | 5.100 | |
| SRR5643524 | five period of Gastrodia elata | 5.500 | |
| SRR5643525 | five period of Gastrodia elata | 2.570 | |
| SRR5643528 | five period of Gastrodia elata | 2.160 | |
| SRR5643658 | five period of Gastrodia elata | 2.410 | |
| SRR5643659 | five period of Gastrodia elata | 5.370 | |
| SRR5643660 | five period of Gastrodia elata | 6.280 | |
| SRR5643661 | five period of Gastrodia elata | 4.310 | |
| SRR5643662 | five period of Gastrodia elata | 4.670 | |
| SRR5643663 | five period of Gastrodia elata | 3.190 | |
| SRR5643664 | five period of Gastrodia elata | 4.260 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.260 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.020 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.690 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.700 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.500 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.430 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.250 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.330 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.500 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.900 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.360 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.360 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.10 |
| Juven | Juvenile tuber | 2.46 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.67 | |
| Mother_Juven | Mother tuber of Juvenile | 2.70 |