Detail information of GWHGAAEX017315/evm.TU.scaffold_80.126


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|296243060|ref|YP_003650547.1|1.00E-21ribosomal RNA-processing protein RRP41/SKI6 [Thermosphaera aggregans DSM 11486]
KOGKOG10698.00E-113Exosomal 3'-5' exoribonuclease complex, subunit Rrp46
nrgi|695019659|ref|XP_009396849.1|4.20E-126PREDICTED: exosome complex exonuclease RRP46 homolog [Musa acuminata subsp. malaccensis]
Swissprottr|Q84T68|EXOS5_ORYSJ7.00E-110Exosome complex exonuclease RRP46 homolog
trEMBLtr|M0ZYX0|M0ZYX0_SOLTU2.00E-118Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400011003}
TAIRAT3G462108.00E-113Ribosomal protein S5 domain 2-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008427556882765751-
Transcript Sequence

Network for GWHGAAEX017315

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01138.20RNase_PH141341.10E-22
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12590RRP46, EXOSC5 RNA degradation map03018

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms19.810
SRR2545915Juvenile tuber19.760
SRP108465SRR5643513five period of Gastrodia elata15.870
SRR5643514five period of Gastrodia elata15.860
SRR5643515five period of Gastrodia elata15.240
SRR5643524five period of Gastrodia elata15.370
SRR5643525five period of Gastrodia elata21.650
SRR5643528five period of Gastrodia elata22.190
SRR5643658five period of Gastrodia elata20.820
SRR5643659five period of Gastrodia elata17.540
SRR5643660five period of Gastrodia elata16.840
SRR5643661five period of Gastrodia elata18.140
SRR5643662five period of Gastrodia elata15.310
SRR5643663five period of Gastrodia elata15.820
SRR5643664five period of Gastrodia elata14.780
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.280
SRR6049655Rhizomagastrodiae_C368-T10_good_117.120
SRR6049656Rhizomagastrodiae_C368-T07_good_113.880
SRR6049657Rhizomagastrodiae_C368-T07_good_114.000
SRR6049658Rhizomagastrodiae_C368-T04_good_112.630
SRR6049659Rhizomagastrodiae_C368-T04_good_111.570
SRR6049660Rhizomagastrodiae_C368-T01_good_112.290
SRR6049661Rhizomagastrodiae_C368-T04_good_112.970
SRR6049662Rhizomagastrodiae_C368-T01_good_116.330
SRR6049663Rhizomagastrodiae_C368-T01_good_114.790
SRR6049664Rhizomagastrodiae_C368-T10_good_115.930
SRR6049665Rhizomagastrodiae_C368-T10_good_115.930
SRP279888GastroGastrodia elata tuber 26.36
JuvenJuvenile tuber18.09
Mother_GastroMother tuber of Gastrodia elata 17.40
Mother_JuvenMother tuber of Juvenile 16.28