Detail information of GWHGAAEX017319/evm.TU.scaffold_80.131
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4751 | 0 | DNA recombinational repair protein BRCA2 |
| nr | gi|672194406|ref|XP_008776286.1| | 0 | PREDICTED: uncharacterized protein LOC103696436 [Phoenix dactylifera] |
| Swissprot | tr|Q7Y1C4|BRC2B_ARATH | 0 | Protein BREAST CANCER SUSCEPTIBILITY 2 homolog B |
| trEMBL | tr|M0T2D0|M0T2D0_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P28060_001} |
| TAIR | AT5G01630 | 0 | BRCA2-like B |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000084 | 2796354 | 2844000 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017319
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00634.17 | BRCA2 | 332 | 359 | 3.60E-05 |
| PF09169.9 | BRCA-2_helical | 626 | 676 | 2.30E-16 |
| PF09103.9 | BRCA-2_OB1 | 681 | 816 | 3.00E-37 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K08775 | BRCA2, FANCD1 | Homologous recombination | map03440 |
| Fanconi anemia pathway | map03460 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000724 | Biological Process | double-strand break repair via homologous recombination |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.480 |
| SRR2545915 | Juvenile tuber | 4.250 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.900 |
| SRR5643514 | five period of Gastrodia elata | 2.100 | |
| SRR5643515 | five period of Gastrodia elata | 1.760 | |
| SRR5643524 | five period of Gastrodia elata | 2.290 | |
| SRR5643525 | five period of Gastrodia elata | 3.980 | |
| SRR5643528 | five period of Gastrodia elata | 1.330 | |
| SRR5643658 | five period of Gastrodia elata | 1.520 | |
| SRR5643659 | five period of Gastrodia elata | 1.080 | |
| SRR5643660 | five period of Gastrodia elata | 0.800 | |
| SRR5643661 | five period of Gastrodia elata | 0.930 | |
| SRR5643662 | five period of Gastrodia elata | 0.780 | |
| SRR5643663 | five period of Gastrodia elata | 0.870 | |
| SRR5643664 | five period of Gastrodia elata | 0.520 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.040 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.880 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.940 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.790 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.130 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.170 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.550 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 2.280 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.620 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 2.610 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.380 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.380 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.80 |
| Juven | Juvenile tuber | 1.81 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.61 | |
| Mother_Juven | Mother tuber of Juvenile | 4.66 |