Gene detail

Detail information of GWHGAAEX017320/evm.TU.scaffold_80.132

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|166362977\|ref\|YP_001655250.1\|	9.00E-15	SNF2 helicase-like protein [Microcystis aeruginosa NIES-843]
KOG	KOG0390	0	DNA repair protein, SNF2 family
nr	gi\|672194402\|ref\|XP_008776285.1\|	0	PREDICTED: SNF2 domain-containing protein CLASSY 1-like [Phoenix dactylifera]
Swissprot	tr\|F4K493\|CLSY2_ARATH	0	SNF2 domain-containing protein CLASSY 2
trEMBL	tr\|K4A2C2\|K4A2C2_SETIT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si033019m}
TAIR	AT5G20420	0	chromatin remodeling 42

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000084	2844020	2854739	-

Transcript Sequence
>GWHTAAEX017320 ATGCTGGAAATCGGAAGAAAACATCCGATTAGTCCAATACCATTTGAGGTTTTTCATAAAGGATCATGGCATGCAGTGGATATTGTAAAAATTATAAAGGGCAAAACCTACATACTGTTGAGCAGCCAGGGTTTAGTGGAAGAGAATGAAATATGTGTGGACAACATCCGCCTACGGTCTATTCGAGCAAGTGCTCATGATTGTTCGCATCTTCTAAAAGAAGGTGTTGACGTTTGCGTCCTTTCAACTCGTCCAATTGCAGAGGGCTCGGATGAAGAACCACAACCAAATGTTCCACTGTGGTATGATGCGAAAATCATTTCTAAAAAGGCTATGCGTCATCAAGGCCGATGCTCTTGTTTATTTTCTGTCATACTCTTTAGAGAAAGAGACTTGAATGGTATTGGAAATAATATAATGTTTGATAGGGCTGAAATCGTGTCAATCGACAGGATTGCAATCCTTCAAAAGCTTGGTGATGAGCCCTTTGAAGAAGGATTCAACCAGTGGTGTTACTCAGAAGACTGCTTTATCTCCAGCAAAAGTAAATTTGTCGACGGATTAGTTTCTTCTGAAGTCTCATGGCTGGCTGTCTTATCTATACAAAAAGAACTCAGTTTTCATATGAAATCAATTCAAAGGAACATAGTATATCAGATCTTGAACAGAGACCAAGAGTCCTCAGGTCATGATAATAATATTTCATTTTCCAAGGACATTAAGATCATTTGCTTCCATAGATTTAATGAAACTTTGAGGCCAGTAGTAAAATTGGTTGATTCTTCTTTTACTAAAGAAATAGTAGAAACAACTTTGCAGCTTGATAATGAATTTGATACAAACCGACTTATAACGGTGGATAGCGACGATGATGTTGAGGTTTTGTATGATTGCATGGGCCTGAGACGGTCCAAACGCCGAAAAGTTAAACCCAAACGTTTTACAAGTTACTCTTCCTCTACTTTTGACCGCACAAGTAGGAAATTGGGACATATTGTAGAGATATTGGATCAAAGTCCTGATGAAGTATCGGATTCATTAGAAGTAGAAGAACCAGTGCTGGATAACTGGGAACTTTGTGTTGTTCCGAGAAGTTCTGATGAGGAATATGAAATGTCACCTACTTCAGCCAGAAAGAAGACATTTGAATGGAAAGTAAAAGAAGACCAACCACAGCTTTTACTTACAATGGGTGAAGACATCTCTGACTTTGAAGTTCATTCAGATGATTCGCTAGATAAGCTAACACAGCATAGACCAGAAAAAATGGTACCGGAACGGAGGGGGAGGCCTAGAAAGTATGGCAAAAGAATTCCGCCTTCACATAACGGTAAGCCTCTTTATAAGAAGAAGTTTTCTTACAGAAAGAAGCTTCTTCTCAGTGCTGCAGAATGCGAACAACTAATAAGGCAATGCATGGGAAATATACAGAATGAAATGGATGCTGAAGCTGAGCTGGGATCCCAATCAGAAAAATCTTTTATTGATGAAAAAGAAGACTTTAATTGGTTTCCATCTCATGAGGTTCAATATGAAATTGATGAGCATGAAGACCTGTGGAAAGAAATGGAGCATACACTTAATGCACTTGCACTTCTTGAACAAAAGGAGATGGACTCTGAGCATTTTGATGATGGGACAGTTCCTTTTTCATTTGAAAATGGCTATCAAGCATGCAAGCATGATTTCAAACTAGATGAACAAATTGGAATAATATGCCAATTGTGCAATTTTGTGCACACAGGAATAAGAGATGTTATGCCCCAATTTATGATGAGTGACAACTGGAACACAAGCAGGGAGCACTTGGGCAAAGATGCATTCAATTTTCTGGGAACTTACTCACTGGATCCATATTCTTTTGGTGATGCCATCACCCATTTGGATCTGACTACGTTGGGAGGAAAAGAAAATGTATGGGCTTTGATACCCGAGCTTAAATTAAGGTTGTATAATCATCAGAAAAAGGCTTTTGAATTTATTTGGAGGAATATTGCTGGGTCTTTGAAACCAAAAGAGATGGATATTCATTCCAGCAACACAGGAGGTTGTGTTATTTCGCACTCGCCTGGTTCGGGGAAAACTTTGCTTTTGATCTCATTTATTATGAGCTATTTGAAACTTTTTCCTAGGAGCCGACCGCTGATCCTTGCCCCCAAGATTGCAGTTTATGTCTGGAGAAGGGAATTTGAGAAGTGGGGTGTTCAGTTTCCTTTACTTGTAATACACCCTGTACAAAGCTTCCATAAAGAAAACTTGAATTGGAAACTAAGAATTCCCTCTATGGATCATAGAAAGCCGAACAGCAAAATGAGGCATTTAGTTGATTGTATATCAAAGTTGCATCAATGGCATAAAGAATCAAGCGTGCTTTTGATGAGTTACTCTTCCTTTTTCTTGATGCAGAAAGAGTCAAAGGATGAACACAAAAAGTTTATGGCAAAAGTTTTGCAGAACAATCCAGGGCTTCTGATTTTAGATGAAGGGCATAATCCCAGAAGTACTATTTCCAAGCTGAGAAAACTCTTAATGCAGGTGAACACAAAATCCAGGATACTTCTTTCGGGCACACTGTTTCAAAACAACTTTGAGGAATATTTCAATACGCTTTGTTTAGCCCGCCCTAGCTTCGTTGATGATGTCCTTGGAGAATTGGATCGAGAAAAACTAAATACTTATAAAAAATCTGAGAAAAGAAGTAAGAGAAAGGAGAGAGTGGCAAGAAAACTTTTTGTGCAGAGAATCGGTGAAAAAATTGAATCTACCAAGGAGGATGACAGGAAGTTGGGTTTTGATGCACTAAACAGAATCACTAATGGATTTCTTGATATTTATGAAGATGACAATTCAGGTAGGCTTCCGGGCTTGGTTATTTATACTATAGTATTGCTGCCAACAGAAATCCAGCATGAGGTTCTAGTTCGTTTACAAAGCTGCCTAAAACTTACAAGAAGATATCCCATTGAATTGGAATTGCTCATTACTGTTGGTTCTATCCATCCATGGTTAATTAAGACCATGGCTCATGCTGAGGATTATTTCAATTCTTCTGAGCTACAGAACATTGAGAGGTACAAGGATAGTATCATAAGTGGTTCTAAGGTTAAGTTTGTCTTTGACATTATTCAGAAAGCCATCATCAGGGGGGAGAAGGTTCTAATCTTTTCGCACAACATTCCTCCTATAAGTTTGCTAGTGAGATTCTTTGAGACTTTTTCGGGGTGGCGCAAGGGAGAAGAAGTCTTAGTTCTTCAAGGTGATCAAGAGATGACTCTGAGAGCAAAAATTATGGACAAATTTAATGGAGATGTTGAAAATAAATGCAAGGTATTGATTGCGTCAACATCAGCATGTGCTGAAGGCATCAGCTTGACGGCAGCATCACGTGTGGTTTTGTTGGACTCGGAGTGGAACCATTCTAAAACAAGGCAAGCAATTGCTAGAGCATTTCGACCAGGTCAGGAGAGAAAGGTCTATGTCTACAAGTTATTAGCATCCGGAACATGGGAGGAGGATAAATATCGCAGCAATGAATGGAAAGCCTGGTTATCGAAAATGGTCTCTATGGGTGAATATATTGAGCATAATTCTTGTAAGAAAGTTGATGTTGTTGAAGATGAGATTTTGAGAGAGCTCAAGGAAGAAGACAAGGGGAAAATGTTCCAGATGATAATGGAACAGACTTGA

Network for GWHGAAEX017320

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00176.22	SNF2_N	648	878	6.90E-17
PF00271.30	Helicase_C	1036	1152	3.80E-12

Protein Sequence

>GWHPAAEX017320
MLEIGRKHPISPIPFEVFHKGSWHAVDIVKIIKGKTYILLSSQGLVEENEICVDNIRLRSIRASAHDCSHLLKEGVDVCVLSTRPIAEGSDEEPQPNVPLWYDAKIISKKAMRHQGRCSCLFSVILFRERDLNGIGNNIMFDRAEIVSIDRIAILQKLGDEPFEEGFNQWCYSEDCFISSKSKFVDGLVSSEVSWLAVLSIQKELSFHMKSIQRNIVYQILNRDQESSGHDNNISFSKDIKIICFHRFNETLRPVVKLVDSSFTKEIVETTLQLDNEFDTNRLITVDSDDDVEVLYDCMGLRRSKRRKVKPKRFTSYSSSTFDRTSRKLGHIVEILDQSPDEVSDSLEVEEPVLDNWELCVVPRSSDEEYEMSPTSARKKTFEWKVKEDQPQLLLTMGEDISDFEVHSDDSLDKLTQHRPEKMVPERRGRPRKYGKRIPPSHNGKPLYKKKFSYRKKLLLSAAECEQLIRQCMGNIQNEMDAEAELGSQSEKSFIDEKEDFNWFPSHEVQYEIDEHEDLWKEMEHTLNALALLEQKEMDSEHFDDGTVPFSFENGYQACKHDFKLDEQIGIICQLCNFVHTGIRDVMPQFMMSDNWNTSREHLGKDAFNFLGTYSLDPYSFGDAITHLDLTTLGGKENVWALIPELKLRLYNHQKKAFEFIWRNIAGSLKPKEMDIHSSNTGGCVISHSPGSGKTLLLISFIMSYLKLFPRSRPLILAPKIAVYVWRREFEKWGVQFPLLVIHPVQSFHKENLNWKLRIPSMDHRKPNSKMRHLVDCISKLHQWHKESSVLLMSYSSFFLMQKESKDEHKKFMAKVLQNNPGLLILDEGHNPRSTISKLRKLLMQVNTKSRILLSGTLFQNNFEEYFNTLCLARPSFVDDVLGELDREKLNTYKKSEKRSKRKERVARKLFVQRIGEKIESTKEDDRKLGFDALNRITNGFLDIYEDDNSGRLPGLVIYTIVLLPTEIQHEVLVRLQSCLKLTRRYPIELELLITVGSIHPWLIKTMAHAEDYFNSSELQNIERYKDSIISGSKVKFVFDIIQKAIIRGEKVLIFSHNIPPISLLVRFFETFSGWRKGEEVLVLQGDQEMTLRAKIMDKFNGDVENKCKVLIASTSACAEGISLTAASRVVLLDSEWNHSKTRQAIARAFRPGQERKVYVYKLLASGTWEEDKYRSNEWKAWLSKMVSMGEYIEHNSCKKVDVVEDEILRELKEEDKGKMFQMIMEQT

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2

KEGG pathway

KO	Enzyme	pathway	mapID
K10875	RAD54L, RAD54	Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	55.760
SRP064423	SRR2545915	Juvenile tuber	46.070
SRP108465	SRR5643513	five period of Gastrodia elata	36.250
	SRR5643514	five period of Gastrodia elata	41.640
	SRR5643515	five period of Gastrodia elata	38.870
	SRR5643524	five period of Gastrodia elata	41.350
	SRR5643525	five period of Gastrodia elata	38.090
	SRR5643528	five period of Gastrodia elata	32.170
	SRR5643658	five period of Gastrodia elata	35.990
	SRR5643659	five period of Gastrodia elata	37.760
	SRR5643660	five period of Gastrodia elata	40.600
	SRR5643661	five period of Gastrodia elata	33.800
	SRR5643662	five period of Gastrodia elata	30.390
	SRR5643663	five period of Gastrodia elata	38.810
	SRR5643664	five period of Gastrodia elata	35.750
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	45.310
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	43.660
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	42.300
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	45.980
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	57.090
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	54.230
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	45.950
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	50.100
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	45.020
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	51.650
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	40.860
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	40.860
SRP279888	Gastro	Gastrodia elata tuber	64.01
	Juven	Juvenile tuber	63.39
	Mother_Gastro	Mother tuber of Gastrodia elata	42.07
	Mother_Juven	Mother tuber of Juvenile	63.05