Detail information of GWHGAAEX017326/evm.TU.scaffold_80.138


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG22730Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins
nrgi|695052438|ref|XP_009414276.1|0PREDICTED: sorting nexin 2B-like [Musa acuminata subsp. malaccensis]
Swissprottr|B9DFS6|SNX2B_ARATH0Sorting nexin 2B
trEMBLtr|M0TSC8|M0TSC8_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P21250_001}
TAIRAT5G071200sorting nexin 2B

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008429439392966091-
Transcript Sequence

Network for GWHGAAEX017326

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00787.23PX912062.00E-19
PF09325.9Vps52704862.80E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0035091Molecular Functionphosphatidylinositol binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms60.370
SRR2545915Juvenile tuber36.640
SRP108465SRR5643513five period of Gastrodia elata48.700
SRR5643514five period of Gastrodia elata41.780
SRR5643515five period of Gastrodia elata44.170
SRR5643524five period of Gastrodia elata42.230
SRR5643525five period of Gastrodia elata51.720
SRR5643528five period of Gastrodia elata37.380
SRR5643658five period of Gastrodia elata47.910
SRR5643659five period of Gastrodia elata54.580
SRR5643660five period of Gastrodia elata53.230
SRR5643661five period of Gastrodia elata49.860
SRR5643662five period of Gastrodia elata53.510
SRR5643663five period of Gastrodia elata44.720
SRR5643664five period of Gastrodia elata51.110
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_147.030
SRR6049655Rhizomagastrodiae_C368-T10_good_140.670
SRR6049656Rhizomagastrodiae_C368-T07_good_146.290
SRR6049657Rhizomagastrodiae_C368-T07_good_151.990
SRR6049658Rhizomagastrodiae_C368-T04_good_156.560
SRR6049659Rhizomagastrodiae_C368-T04_good_155.330
SRR6049660Rhizomagastrodiae_C368-T01_good_147.210
SRR6049661Rhizomagastrodiae_C368-T04_good_153.150
SRR6049662Rhizomagastrodiae_C368-T01_good_143.370
SRR6049663Rhizomagastrodiae_C368-T01_good_139.080
SRR6049664Rhizomagastrodiae_C368-T10_good_145.760
SRR6049665Rhizomagastrodiae_C368-T10_good_145.760
SRP279888GastroGastrodia elata tuber 48.10
JuvenJuvenile tuber85.43
Mother_GastroMother tuber of Gastrodia elata 34.16
Mother_JuvenMother tuber of Juvenile 44.36