Detail information of GWHGAAEX017336/evm.TU.scaffold_80.149


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|702274440|ref|XP_010044098.1|0PREDICTED: LIMR family protein At5g01460 [Eucalyptus grandis]
Swissprottr|Q9M028|LMBD2_ARATH0LIMR family protein At5g01460
trEMBLtr|A0A059D5V1|A0A059D5V1_EUCGR0Uncharacterized protein {ECO:0000313|EMBL:KCW86113.1}
TAIRAT5G014600LMBR1-like membrane protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008431391933169803+
Transcript Sequence

Network for GWHGAAEX017336

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04791.15LMBR192771.80E-49
PF04791.15LMBR12744894.70E-33
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14617LMBRD1 Vitamin digestion and absorption map04977

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms47.260
SRR2545915Juvenile tuber49.610
SRP108465SRR5643513five period of Gastrodia elata49.990
SRR5643514five period of Gastrodia elata43.450
SRR5643515five period of Gastrodia elata47.290
SRR5643524five period of Gastrodia elata47.180
SRR5643525five period of Gastrodia elata73.600
SRR5643528five period of Gastrodia elata74.590
SRR5643658five period of Gastrodia elata77.540
SRR5643659five period of Gastrodia elata46.650
SRR5643660five period of Gastrodia elata46.220
SRR5643661five period of Gastrodia elata49.230
SRR5643662five period of Gastrodia elata49.290
SRR5643663five period of Gastrodia elata49.350
SRR5643664five period of Gastrodia elata47.210
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_147.930
SRR6049655Rhizomagastrodiae_C368-T10_good_139.010
SRR6049656Rhizomagastrodiae_C368-T07_good_150.500
SRR6049657Rhizomagastrodiae_C368-T07_good_147.290
SRR6049658Rhizomagastrodiae_C368-T04_good_149.630
SRR6049659Rhizomagastrodiae_C368-T04_good_147.490
SRR6049660Rhizomagastrodiae_C368-T01_good_144.360
SRR6049661Rhizomagastrodiae_C368-T04_good_147.640
SRR6049662Rhizomagastrodiae_C368-T01_good_147.810
SRR6049663Rhizomagastrodiae_C368-T01_good_145.750
SRR6049664Rhizomagastrodiae_C368-T10_good_147.200
SRR6049665Rhizomagastrodiae_C368-T10_good_147.200
SRP279888GastroGastrodia elata tuber 47.32
JuvenJuvenile tuber54.09
Mother_GastroMother tuber of Gastrodia elata 43.53
Mother_JuvenMother tuber of Juvenile 53.66