Gene detail

Detail information of GWHGAAEX017338/evm.TU.scaffold_80.151

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2612	3.00E-71	Predicted integral membrane protein
nr	gi\|672131179\|ref\|XP_008789146.1\|	8.02E-80	PREDICTED: SAGA-associated factor 11 homolog [Phoenix dactylifera]
trEMBL	tr\|W9R4E9\|W9R4E9_9ROSA	1.00E-79	SAGA-associated factor 11 {ECO:0000256\|RuleBase:RU261113}
TAIR	AT5G58570	3.00E-71	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000084	3182697	3185076	+

Transcript Sequence
>GWHTAAEX017338 CTACACTCAGAGAGGACTTGCCTTAGCCCATTTACTTTTCTTGCCCACCCGTGTGCTCCGCCTCTCTCGTATCACTCGCTTGTTTCTCTGTTGATCCGATCCCCGTAAACCCTAGCTCGTTTTTCGCTCTCATCTTCAATCCATCTGTCACGATTCATCCCCTTCTTTCAAATCCACCGACCAATCGCCGTCGGAAGGTCAATTTGCATTAGTATATCTGAGGCATCAACTCTAAAGAGAATTTGATCCAGGAAATTTCTGGTGGGTTCTGGAAATGTCGGTTTCGGACGATGGAAGCTCATCTCCTCAATCGCAGGTGGGCTCTTTTCGCTGTCATCTGAATAACGAATAGACCCATGACTCAATTGAGCGCTTACATTTTATCTTTGCCTGAGATACATCCTTGCAAGGTGCGGTTTTCTTTGCAAACTCTTACTTCAGTAAAGGGAATTCTACACTAATTTTAATACTGTGAAATTTTCCAAAAAAATGCTTATTTTTCTTATGCTCATAATGAAATATGAGTGCAAGTGGATGATGTTCCGTGTGTTTTACACTAGTTTTAGTCAAAAGAATCTCATTAATAGTTCAAAATGATAACTTTGTACGAGTTGATATTCTGCTCAGTTATCTGAAACTGCAATAGAGAAATTAACTGATTAACTGATTCAAAGCAATGAGAAATGCTCCTGCCAACTTTGGAATGCCTGATTGAACGATTAGGGTTTGGTGCATTATGCAAAGCCAGTTATGAATAGATTGCTTTACTTCTTAACCCTTTTAAATTTGTTCTTTCAGCTATCTTCTCATGTGTTTGGAGATTTGCTCGATTCTATGATTGTAGATGTGGCATCGGAATGCCACCGTATAGCCAGGTTAGGGTTGGACCGTAATCTTGAAGAAGAGGAGGAGGAGCTCAGGCTTTCAGCTCAGGCAAGGATGGCAAATCCAAGCAGCAGCAGCGATGGTAATAGCAAGTACTCTGTTGATATATTTGGACAGACGCATCCTGCTATTGCCAGTGAGATCTTTGATTGCATGAATTGCGGGAGACCGATAGTTGCTGGGCGGTTTGCTCCTCACTTAGAGAAGTGCATGGGGAAGGGCCGAAAGGCACGCCAAAGGACCACTAGAAGCACCACCATGGCGCAGAGCAGGAATTCCCGTGGCAGCCCAATATCAGTCTATGCTCCATACTCTAGTGGCAGCAGCACGAACAGAGTTCCGAATGGGAGCAGCGGCAGTGCCTCTGCAGAGTACAAAGGCTATGCATTTGAAGATGCATGAAGTACCAACCAAAGGCCTTTCTTTTATTGTTTCAAAACTACGTGACATTTATACTGTCATGATGCTGAAACTGCACAAGGTTCTAAACTTCGAGACCTTAAGCATGTGCTCGCATCTTGCTAACTGGCCATTTTAATAGTTTAAGCATATATAACTGTTTCTATCCATCGATTTTTCATAAGCTTCACTGTTCTTCCAAAATTGATTATTTAATGAAAGATCTTATTTAGTTTGATACTGTAAAAAGAGGATTTCAAGGTATTTTTGTTGTCACTAATGCTCAAG

Network for GWHGAAEX017338

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08209.10	Sgf11	91	121	5.00E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.420
SRP064423	SRR2545915	Juvenile tuber	9.300
SRP108465	SRR5643513	five period of Gastrodia elata	8.460
	SRR5643514	five period of Gastrodia elata	8.640
	SRR5643515	five period of Gastrodia elata	6.000
	SRR5643524	five period of Gastrodia elata	8.090
	SRR5643525	five period of Gastrodia elata	4.410
	SRR5643528	five period of Gastrodia elata	5.240
	SRR5643658	five period of Gastrodia elata	4.610
	SRR5643659	five period of Gastrodia elata	6.750
	SRR5643660	five period of Gastrodia elata	7.580
	SRR5643661	five period of Gastrodia elata	8.470
	SRR5643662	five period of Gastrodia elata	6.600
	SRR5643663	five period of Gastrodia elata	7.320
	SRR5643664	five period of Gastrodia elata	7.380
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.510
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.130
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.750
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.500
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.300
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.020
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.070
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.840
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.310
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.530
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.190
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.190
SRP279888	Gastro	Gastrodia elata tuber	8.38
	Juven	Juvenile tuber	8.51
	Mother_Gastro	Mother tuber of Gastrodia elata	6.44
	Mother_Juven	Mother tuber of Juvenile	6.68