Detail information of GWHGAAEX017344/evm.TU.scaffold_80.158
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|470182681|ref|YP_007568556.1| | 2.00E-179 | Pyruvate decarboxylase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] |
| KOG | KOG1184 | 0 | Thiamine pyrophosphate-requiring enzyme |
| nr | gi|672191037|ref|XP_008775408.1| | 0 | PREDICTED: pyruvate decarboxylase 1 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|A2XFI3|PDC2_ORYSI | 0 | Pyruvate decarboxylase 2 |
| trEMBL | tr|A0FHC1|A0FHC1_LYCAU | 0 | Pyruvate decarboxylase {ECO:0000313|EMBL:ABJ99596.1} |
| TAIR | AT5G01320 | 0 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000084 | 3507642 | 3521342 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017344
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02776.17 | TPP_enzyme_N | 41 | 209 | 4.50E-35 |
| PF00205.21 | TPP_enzyme_M | 238 | 347 | 3.70E-20 |
| PF02775.20 | TPP_enzyme_C | 448 | 573 | 1.10E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01568 | PDC, pdc | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Biosynthesis of antibiotics | map01130 | ||
| Glycolysis / Gluconeogenesis | map00010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016831 | Molecular Function | carboxy-lyase activity |
| GO:0000287 | Molecular Function | magnesium ion binding |
| GO:0030976 | Molecular Function | thiamine pyrophosphate binding |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 170.070 |
| SRR2545915 | Juvenile tuber | 159.850 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 127.710 |
| SRR5643514 | five period of Gastrodia elata | 128.830 | |
| SRR5643515 | five period of Gastrodia elata | 116.240 | |
| SRR5643524 | five period of Gastrodia elata | 123.880 | |
| SRR5643525 | five period of Gastrodia elata | 63.740 | |
| SRR5643528 | five period of Gastrodia elata | 49.490 | |
| SRR5643658 | five period of Gastrodia elata | 58.410 | |
| SRR5643659 | five period of Gastrodia elata | 133.150 | |
| SRR5643660 | five period of Gastrodia elata | 154.890 | |
| SRR5643661 | five period of Gastrodia elata | 156.150 | |
| SRR5643662 | five period of Gastrodia elata | 158.200 | |
| SRR5643663 | five period of Gastrodia elata | 147.550 | |
| SRR5643664 | five period of Gastrodia elata | 187.290 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 524.000 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 221.490 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 512.450 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 507.260 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 661.580 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 666.080 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 652.110 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 631.570 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 558.210 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 778.640 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 225.180 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 225.180 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 353.05 |
| Juven | Juvenile tuber | 494.43 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 188.83 | |
| Mother_Juven | Mother tuber of Juvenile | 201.99 |