Gene detail

Detail information of GWHGAAEX017346/evm.TU.scaffold_80.162

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1993	0	Nuclear transport receptor KAP120 (importin beta superfamily)
nr	gi\|743781177\|ref\|XP_010920803.1\|	0	PREDICTED: importin-11 [Elaeis guineensis]
Swissprot	tr\|F4J738\|SAD2H_ARATH	8.00E-11	Importin beta-like SAD2 homolog {ECO:0000305}
trEMBL	tr\|W5C3Y8\|W5C3Y8_WHEAT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Traes_2DS_2D338655D.1}
TAIR	AT3G08960	0	ARM repeat superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000084	3534219	3609471	+

Transcript Sequence
>GWHTAAEX017346 TATCATTTCACCTTCCCTGCCTGATCGGTCGCGGGCTTTCGTTGGCGTCGGCTTTACTCGTCCCCTATAATCTCGGAGCTGCCCTAGAGTCTGTTCTACGACGTACCCGCCATTTTCGTCCACTTTCTTTGAATCTCATTCAGGCCTTCGATTCATTGCTTATTATTTCTGATTCGGACTGTGGATTTGCTCCCGATCGGCCGAGGGAACCATGGCTTTGTCCGCCTCCGACGTCCAAACCGTTTTTTCACTCCTTTCAAACGCGCTCAGCTCCGATGTGTCTGTTCGAAGGCCAGCAGAATCTACCCTCTCACAGTGCGAGAGCCGTCCCGGATTCTGCTCATGTCTTTTCGAAATCATTGCTGCCAGGGATCTAGCTTGCCGTGATGACGTCCGTCTCCTGGCTTCCGTTTACTTCAAGAACAGCATAAGTCGCTATTGGAGGCAGCGTGTTATTAGCAATGATGAGAAGGCTCATCTTCGCAAAAAATTGCTGTTAGATATCCGTGAAGAGAGTCCGCCGATAGCGCTTCAGTTGGCTGTTCTTATATCAAAAATCGCACGTATAGATTATCCCAAAGAATGGCCAGAGCTGTTTTCCATCTTGGCACAGAAGCTTCAATCTGCAGATGCAGTAGCTTCACATAGGGTCTTTATGGTACTTTTCCGAACATTAAAGGAACTGTCAACAAAGCGGCTTATTGCAGATCAAAGAACTTTTGCCGAGATAGCTGCACTATTGTTCGATTATACCTGGAACCTATGGAAAAATGATGTGCGGACCATATTACACAGATTTTCTAGTTCATCTCAGCTTGTTTCGTCAAATTCATTGATAGAACGTCAGCATGATCTTCTGTTGACCTGTGAAAGATGGTTGCTTTGTACTAAGATTGTTCGGCAACTGATTATTTATGGGAATGCAAGTGATGCAACGTCTGCTCAGGAGGTTCGTCCAGTCAAGGAGGTCTGTCCTGTGCTCTTGAGTGCTATTCAATCTTTTCTTCCATTTTACATTTCGTTCATGGAAGGACAGCCAAAGTTATGGAACTTCACAAAGAGAGCTTGCATTAAATTGATGAAGGTTTTGGTTGCATTTCAGGGCAGACATCCATACTCGTTTGCTGATAATAGTGTTCTTCCAGTTGTTTTAGACTTCTGCTTGATTAAGATTATCAACCCTGAACAAGAAGTTTCATCTTTTGATGAATTTTTGATTCAATGCATGGTTTTAATCAAGTCTGCACTGGAATGTAAGGAGTACAAACCATGCCTTACTGGTCGTGTTATTAATGAAAGTGGAGACTCTTTAGAGCAAAAGAAGAAGAGTATAACTACTGCTGTTGCTGACATGTTTGCTTCAGTATTACCCAATGACCGTGCTGTTATACTGTGCAACATTTTGATAAGAAGGTATTTCGTTTACACTTCGAAGGACTTGGCTGAATGGTATCAGAATTCTGAATCTTTTCACCATGAGCAAGACATGCTGCAGTGGACAGAAAAACTTAGGCCATGTGCTGAAGCTCTTTATATTGTTTTGTTTGAAAATTTTAGACCTCTACTTGCCCCTGTTGTGGTCTCTATTCTTAAAGAAGCAATGACTAGTTCACCTCCTATAGAATGTGAAATTAGTTCTGCAATGCTACTAAAAGATGCTGCTTACAGTGCTGCTGGACATGTGTATTATGAGCTCTCGGCTTACTTAAGTTTTGGTGACTGGTTCAATGGGTCTCTTTCTGTTGAACTTTCAAGTAATCATCCAAACATGCGCATCATTCATAGAAAAATTGCTTTGATACTTGGGCAATGGGTTTCTGAGATTAAAGGAGACGCCAGAAAACTAGTGTATCATGCACTGACCAAATTGCTTCAAGACAATGATATTGCTGTTAGACTGGCGTCCTGTCGCTCTTTGTGCTATCTTGTTCAAGACTCCAACTCTGAACAGGACTTTTTTGACCTTTTGTCTACATGTTTGAATTTATGCTTCAAACTGGTGGAAGATGTTGAAGAATTGGATTCAAAGGTTCAAGTTCTAAACTTGGTATCTTTGCTTACTGAACATGTAGGAGAGAGAATAACGCCTTTTGCAGGCCAACTGGTGAATTTTTTCCAAAAGATGTGGAAGTCATCCGTTGGTGAAAGCTTACTTCAGATTCAACTTCTAGCGGCCCTTAGAAATTTTGTTTGCTCACTTGGATATCAGTCTTGTATCTGCTATAACATGCTTTTACCTATTCTACAAAAGGGTATTGACGTTGATAACCCTGATGCACTCAATCTGCTTGAGGACAGTGTTCTGCTGTGGGAGGCTGTGCTTTCTCATGCTACATCAATAGTTCCTCAGCTGTTGGACCTTTTTCCTTTTCTTGTGTCCATAGTTGAAAGAAGTTTCGATCATTTGCAGGTTGTTGTGGATATCATTGAAGACTACATAATATTTGGTGGTGCAGAGTTCTTAAATATCCATGCCACGAGTGTAGCTAAATTGCTTGATGGTATTGTTGGAAATGTAAATGATAAAGGCCTGCTATCAACAATTCCAATTCTTGATATCTTAATTCAGTGCTTTCCCTTGGAAGCTCCTACATTGATTTCTGGAGTTCTTCAGAAACTTATATTGTTATGCTTGAGTGGAGAAGATGACCATAATCCTTCCAAGACAGCCGTCCGCACCTGCTGTGGAGCTATTTTGGCAAGGCTTTTAGTGATGAATACCAATTACCTTGCTCGTCTGGTAGCCGAGCCATCTCTTGCTGCTGCCCTCCAGCAGGCCGGCCTCTCCATCAATCAAAATATCCTTCTCTGCCTGGCCAACGTTTGGATTGATAAGATTGACAGCACCACATTTATTCAAAGAAAGACTTATGCTTCCGCTCTTTCTATCATGCTGACATTAAGGCTGCCTGAGGTCATTGATTTACTTGATGATGTTCTAAGTGTTTGCACCAGTGTCATTTTGGGAAGACCAGAAAATAATAATAGCCAAGAAGATTCCAGTGGCGACACCACGAGCTCATCCTGGCCTGCCAATGAGGGCTTCGGCTACTACAGCACGGTCCCGAGTAAAGAACTGCGTAGGAGACAAATAAAAGAATCAGATCCGATAAAACAGCTGTCTTTGGAGGGCATGCTGAGAGACAACCTGAATGCTTGCGCGGCCTTTCATGGGGAGCCGTCTTTCCATGCGGCCATGAGCAGGATGCATCCTTCGGCTTTCGCCCAATTGCAGCAGGCATTAAAGATGATAACCAGAATGACATCTTAATAAATTATTGTTTTTCCGGCATTATTTTATTCGTCGGATGCATTCGTTTTCGCCGCCAATAGCGCACGCCGAGCGATAGAAGGGAAAACCCTGCACTATCCCATATATACAGAGTGCTGGATGTTCTTTGCTCTAGGCTTGTGTTGTGGCCTTGAAAAATGTAGGGTACCCATTATTATAGGGTCCCAATCCTTGTTTGTGCCCTCCCTGTACTTTGATGTGCCTTAGTAGCTATAAAGTAAAGCAGGTTTTTTTTCTTCTTCTTCTTCTTTGTCTTTGTGACTGGCTCTTTCTTCCTATTTTCACGCTACAATTTGCTATTGTATTATGTATACCACCCATATTCATAAATCATCAGTGAAGCCAAAATTTGATTTTTGTAAAAATTTGTGACAAGGCTTTAGGGTTTTTAGGGTATACCCTGCACTATCCCACATGTAACTGAAGCTCGAACGGTATATATCTAGAATAACAATTTGATATATGTAGAAATAGCACAATAATATTTTTAATTTAAAGATGAAATTATTAATTGCGAC

Network for GWHGAAEX017346

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03810.18	IBN_N	29	95	1.20E-12

Protein Sequence

>GWHPAAEX017346
MALSASDVQTVFSLLSNALSSDVSVRRPAESTLSQCESRPGFCSCLFEIIAARDLACRDDVRLLASVYFKNSISRYWRQRVISNDEKAHLRKKLLLDIREESPPIALQLAVLISKIARIDYPKEWPELFSILAQKLQSADAVASHRVFMVLFRTLKELSTKRLIADQRTFAEIAALLFDYTWNLWKNDVRTILHRFSSSSQLVSSNSLIERQHDLLLTCERWLLCTKIVRQLIIYGNASDATSAQEVRPVKEVCPVLLSAIQSFLPFYISFMEGQPKLWNFTKRACIKLMKVLVAFQGRHPYSFADNSVLPVVLDFCLIKIINPEQEVSSFDEFLIQCMVLIKSALECKEYKPCLTGRVINESGDSLEQKKKSITTAVADMFASVLPNDRAVILCNILIRRYFVYTSKDLAEWYQNSESFHHEQDMLQWTEKLRPCAEALYIVLFENFRPLLAPVVVSILKEAMTSSPPIECEISSAMLLKDAAYSAAGHVYYELSAYLSFGDWFNGSLSVELSSNHPNMRIIHRKIALILGQWVSEIKGDARKLVYHALTKLLQDNDIAVRLASCRSLCYLVQDSNSEQDFFDLLSTCLNLCFKLVEDVEELDSKVQVLNLVSLLTEHVGERITPFAGQLVNFFQKMWKSSVGESLLQIQLLAALRNFVCSLGYQSCICYNMLLPILQKGIDVDNPDALNLLEDSVLLWEAVLSHATSIVPQLLDLFPFLVSIVERSFDHLQVVVDIIEDYIIFGGAEFLNIHATSVAKLLDGIVGNVNDKGLLSTIPILDILIQCFPLEAPTLISGVLQKLILLCLSGEDDHNPSKTAVRTCCGAILARLLVMNTNYLARLVAEPSLAAALQQAGLSINQNILLCLANVWIDKIDSTTFIQRKTYASALSIMLTLRLPEVIDLLDDVLSVCTSVILGRPENNNSQEDSSGDTTSSSWPANEGFGYYSTVPSKELRRRQIKESDPIKQLSLEGMLRDNLNACAAFHGEPSFHAAMSRMHPSAFAQLQQALKMITRMTS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006886	Biological Process	intracellular protein transport
GO:0008536	Molecular Function	Ran GTPase binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	20.430
SRP064423	SRR2545915	Juvenile tuber	33.710
SRP108465	SRR5643513	five period of Gastrodia elata	35.070
	SRR5643514	five period of Gastrodia elata	42.420
	SRR5643515	five period of Gastrodia elata	39.410
	SRR5643524	five period of Gastrodia elata	38.920
	SRR5643525	five period of Gastrodia elata	31.320
	SRR5643528	five period of Gastrodia elata	25.910
	SRR5643658	five period of Gastrodia elata	38.130
	SRR5643659	five period of Gastrodia elata	38.390
	SRR5643660	five period of Gastrodia elata	37.770
	SRR5643661	five period of Gastrodia elata	36.560
	SRR5643662	five period of Gastrodia elata	34.600
	SRR5643663	five period of Gastrodia elata	41.600
	SRR5643664	five period of Gastrodia elata	41.850
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	32.680
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	34.900
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	30.970
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	34.650
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	36.670
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	37.760
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	32.970
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	35.680
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	31.390
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	33.360
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	33.660
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	33.660
SRP279888	Gastro	Gastrodia elata tuber	53.66
	Juven	Juvenile tuber	54.74
	Mother_Gastro	Mother tuber of Gastrodia elata	79.39
	Mother_Juven	Mother tuber of Juvenile	61.32