Detail information of GWHGAAEX017355/evm.TU.scaffold_80.174


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|695030593|ref|XP_009402767.1|5.95E-81PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q39237|TGA1_ARATH5.00E-11Transcription factor TGA1
trEMBLtr|M0T2F2|M0T2F2_MUSAM2.00E-81Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P28280_001}
TAIRAT4G18690_11.00E-28Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008437235423724375+
Transcript Sequence

Network for GWHGAAEX017355

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module13

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF14144.5DOG1331137.60E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006351Biological Processtranscription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms9.290
SRR2545915Juvenile tuber4.330
SRP108465SRR5643513five period of Gastrodia elata23.240
SRR5643514five period of Gastrodia elata8.860
SRR5643515five period of Gastrodia elata9.920
SRR5643524five period of Gastrodia elata8.670
SRR5643525five period of Gastrodia elata65.680
SRR5643528five period of Gastrodia elata29.910
SRR5643658five period of Gastrodia elata39.840
SRR5643659five period of Gastrodia elata25.810
SRR5643660five period of Gastrodia elata12.330
SRR5643661five period of Gastrodia elata31.880
SRR5643662five period of Gastrodia elata79.010
SRR5643663five period of Gastrodia elata44.740
SRR5643664five period of Gastrodia elata179.580
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_140.520
SRR6049655Rhizomagastrodiae_C368-T10_good_132.010
SRR6049656Rhizomagastrodiae_C368-T07_good_131.670
SRR6049657Rhizomagastrodiae_C368-T07_good_135.050
SRR6049658Rhizomagastrodiae_C368-T04_good_149.800
SRR6049659Rhizomagastrodiae_C368-T04_good_151.690
SRR6049660Rhizomagastrodiae_C368-T01_good_149.690
SRR6049661Rhizomagastrodiae_C368-T04_good_158.360
SRR6049662Rhizomagastrodiae_C368-T01_good_114.820
SRR6049663Rhizomagastrodiae_C368-T01_good_132.450
SRR6049664Rhizomagastrodiae_C368-T10_good_147.820
SRR6049665Rhizomagastrodiae_C368-T10_good_147.820
SRP279888GastroGastrodia elata tuber 42.55
JuvenJuvenile tuber5.63
Mother_GastroMother tuber of Gastrodia elata 30.13
Mother_JuvenMother tuber of Juvenile 19.13