Detail information of GWHGAAEX017359/evm.TU.scaffold_80.179
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|427716641|ref|YP_007064635.1| | 4.00E-38 | WD40 repeat-containing protein [Calothrix sp. PCC 7507] |
| KOG | KOG0645 | 8.00E-136 | WD40 repeat protein |
| nr | gi|743870198|ref|XP_010905986.1| | 0 | PREDICTED: probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog [Elaeis guineensis] |
| Swissprot | tr|A8IZG4|CIAO1_CHLRE | 2.00E-107 | Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog {ECO:0000255|HAMAP-Rule:MF_03037} |
| trEMBL | tr|M0T1U4|M0T1U4_MUSAM | 0 | Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog {ECO:0000256|HAMAP-Rule:MF_03037} |
| TAIR | AT2G26060 | 8.00E-136 | Transducin/WD40 repeat-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000084 | 3744671 | 3781475 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017359
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 15 | 55 | 0.0003 |
| PF00400.31 | WD40 | 64 | 102 | 0.0093 |
| PF00400.31 | WD40 | 110 | 146 | 3.20E-09 |
| PF00400.31 | WD40 | 155 | 190 | 0.0053 |
| PF00400.31 | WD40 | 201 | 242 | 2.30E-06 |
| PF00400.31 | WD40 | 316 | 347 | 7.20E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016226 | Biological Process | iron-sulfur cluster assembly |
| GO:0005515 | Molecular Function | protein binding |
| GO:0097361 | Cellular Component | CIA complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 21.750 |
| SRR2545915 | Juvenile tuber | 20.780 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.960 |
| SRR5643514 | five period of Gastrodia elata | 10.650 | |
| SRR5643515 | five period of Gastrodia elata | 12.310 | |
| SRR5643524 | five period of Gastrodia elata | 13.440 | |
| SRR5643525 | five period of Gastrodia elata | 15.700 | |
| SRR5643528 | five period of Gastrodia elata | 16.140 | |
| SRR5643658 | five period of Gastrodia elata | 17.000 | |
| SRR5643659 | five period of Gastrodia elata | 13.760 | |
| SRR5643660 | five period of Gastrodia elata | 16.440 | |
| SRR5643661 | five period of Gastrodia elata | 14.970 | |
| SRR5643662 | five period of Gastrodia elata | 13.050 | |
| SRR5643663 | five period of Gastrodia elata | 12.590 | |
| SRR5643664 | five period of Gastrodia elata | 14.150 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.130 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.750 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 14.540 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.870 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.860 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 18.180 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 17.230 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 15.110 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.190 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.780 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.310 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.310 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.29 |
| Juven | Juvenile tuber | 15.34 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 15.28 | |
| Mother_Juven | Mother tuber of Juvenile | 16.71 |