Detail information of GWHGAAEX017362/evm.TU.scaffold_80.182
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|37521534|ref|NP_924911.1| | 3.00E-19 | hypothetical protein glr1965 [Gloeobacter violaceus PCC 7421] |
| KOG | KOG0645 | 2.00E-60 | WD40 repeat protein |
| nr | gi|695030328|ref|XP_009402621.1| | 6.83E-75 | PREDICTED: probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|A8IZG4|CIAO1_CHLRE | 2.00E-46 | Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog {ECO:0000255|HAMAP-Rule:MF_03037} |
| trEMBL | tr|M0T1U4|M0T1U4_MUSAM | 3.00E-75 | Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog {ECO:0000256|HAMAP-Rule:MF_03037} |
| TAIR | AT2G26060 | 2.00E-60 | Transducin/WD40 repeat-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000084 | 3795092 | 3797061 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017362
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module8 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 35 | 65 | 1.40E-07 |
| PF00400.31 | WD40 | 74 | 109 | 0.0019 |
| PF00400.31 | WD40 | 120 | 161 | 7.60E-07 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.490 |
| SRR2545915 | Juvenile tuber | 9.300 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.000 |
| SRR5643514 | five period of Gastrodia elata | 0.000 | |
| SRR5643515 | five period of Gastrodia elata | 0.000 | |
| SRR5643524 | five period of Gastrodia elata | 0.000 | |
| SRR5643525 | five period of Gastrodia elata | 0.000 | |
| SRR5643528 | five period of Gastrodia elata | 0.000 | |
| SRR5643658 | five period of Gastrodia elata | 0.000 | |
| SRR5643659 | five period of Gastrodia elata | 1.410 | |
| SRR5643660 | five period of Gastrodia elata | 0.110 | |
| SRR5643661 | five period of Gastrodia elata | 0.110 | |
| SRR5643662 | five period of Gastrodia elata | 0.000 | |
| SRR5643663 | five period of Gastrodia elata | 2.690 | |
| SRR5643664 | five period of Gastrodia elata | 1.630 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.140 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 0.650 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.230 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.340 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.620 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 4.880 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 3.060 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 0.350 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 2.290 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.040 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 0.520 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 0.520 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 0.04 |
| Juven | Juvenile tuber | 0.04 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.20 | |
| Mother_Juven | Mother tuber of Juvenile | 0.17 |