Detail information of GWHGAAEX017364/evm.TU.scaffold_80.184
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|568282650|ref|YP_008970402.1| | 3.00E-72 | iron transporter [Leisingera methylohalidivorans DSM 14336] |
| KOG | KOG2358 | 9.00E-121 | NifU-like domain-containing proteins |
| nr | gi|743884329|ref|XP_010909655.1| | 3.85E-130 | PREDICTED: nifU-like protein 4, mitochondrial [Elaeis guineensis] |
| Swissprot | tr|Q9LIG6|NIFU4_ARATH | 3.00E-121 | NifU-like protein 4, mitochondrial (Precursor) |
| trEMBL | tr|F6HVQ1|F6HVQ1_VITVI | 5.00E-129 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB58764.1} |
| TAIR | AT3G20970 | 9.00E-121 | NFU domain protein 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000084 | 3810172 | 3826051 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017364
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08712.10 | Nfu_N | 76 | 162 | 6.80E-30 |
| PF01106.16 | NifU | 190 | 258 | 8.20E-29 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016226 | Biological Process | iron-sulfur cluster assembly |
| GO:0005506 | Molecular Function | iron ion binding |
| GO:0051536 | Molecular Function | iron-sulfur cluster binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 61.550 |
| SRR2545915 | Juvenile tuber | 65.910 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 47.410 |
| SRR5643514 | five period of Gastrodia elata | 43.670 | |
| SRR5643515 | five period of Gastrodia elata | 35.640 | |
| SRR5643524 | five period of Gastrodia elata | 40.210 | |
| SRR5643525 | five period of Gastrodia elata | 31.160 | |
| SRR5643528 | five period of Gastrodia elata | 35.540 | |
| SRR5643658 | five period of Gastrodia elata | 29.720 | |
| SRR5643659 | five period of Gastrodia elata | 26.550 | |
| SRR5643660 | five period of Gastrodia elata | 31.360 | |
| SRR5643661 | five period of Gastrodia elata | 30.690 | |
| SRR5643662 | five period of Gastrodia elata | 25.810 | |
| SRR5643663 | five period of Gastrodia elata | 29.990 | |
| SRR5643664 | five period of Gastrodia elata | 27.160 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 39.670 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 55.680 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 36.300 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 33.970 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 37.610 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 37.190 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 30.140 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 30.060 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 36.140 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 33.400 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 50.520 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 50.520 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 39.64 |
| Juven | Juvenile tuber | 41.98 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 24.44 | |
| Mother_Juven | Mother tuber of Juvenile | 38.41 |