Detail information of GWHGAAEX017365/evm.TU.scaffold_80.185


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|427721089|ref|YP_007069083.1|1.00E-21(myosin heavy-chain) kinase [Calothrix sp. PCC 7507]
KOGKOG42838.00E-131Transcription-coupled repair protein CSA, contains WD40 domain
nrgi|743882259|ref|XP_010909113.1|0PREDICTED: DNA excision repair protein ERCC-8-like isoform X2 [Elaeis guineensis]
Swissprottr|Q3Y8L7|DAW1_CHLRE1.00E-11Dynein assembly factor with WDR repeat domains 1
trEMBLtr|M0T8D0|M0T8D0_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P19320_001}
TAIRAT1G278408.00E-131Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008438280963862815+
Transcript Sequence

Network for GWHGAAEX017365

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.31WD401001320.064
PF00400.31WD401822198.30E-07
PF00400.31WD403113420.00096
PF00400.31WD403934290.00013
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
K10570ERCC8, CKN1, CSA Ubiquitin mediated proteolysis map04120
Nucleotide excision repairmap03420

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms24.840
SRR2545915Juvenile tuber17.600
SRP108465SRR5643513five period of Gastrodia elata16.510
SRR5643514five period of Gastrodia elata18.810
SRR5643515five period of Gastrodia elata17.780
SRR5643524five period of Gastrodia elata21.820
SRR5643525five period of Gastrodia elata19.420
SRR5643528five period of Gastrodia elata19.900
SRR5643658five period of Gastrodia elata26.690
SRR5643659five period of Gastrodia elata17.500
SRR5643660five period of Gastrodia elata16.680
SRR5643661five period of Gastrodia elata16.360
SRR5643662five period of Gastrodia elata13.630
SRR5643663five period of Gastrodia elata18.900
SRR5643664five period of Gastrodia elata14.910
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_117.410
SRR6049655Rhizomagastrodiae_C368-T10_good_114.120
SRR6049656Rhizomagastrodiae_C368-T07_good_118.130
SRR6049657Rhizomagastrodiae_C368-T07_good_124.180
SRR6049658Rhizomagastrodiae_C368-T04_good_126.350
SRR6049659Rhizomagastrodiae_C368-T04_good_128.240
SRR6049660Rhizomagastrodiae_C368-T01_good_121.420
SRR6049661Rhizomagastrodiae_C368-T04_good_122.790
SRR6049662Rhizomagastrodiae_C368-T01_good_111.570
SRR6049663Rhizomagastrodiae_C368-T01_good_119.320
SRR6049664Rhizomagastrodiae_C368-T10_good_118.030
SRR6049665Rhizomagastrodiae_C368-T10_good_118.030
SRP279888GastroGastrodia elata tuber 25.02
JuvenJuvenile tuber22.32
Mother_GastroMother tuber of Gastrodia elata 32.34
Mother_JuvenMother tuber of Juvenile 37.83