Detail information of GWHGAAEX017369/evm.TU.scaffold_80.189
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|291286953|ref|YP_003503769.1| | 1.00E-58 | peptidyl-prolyl isomerase [Denitrovibrio acetiphilus DSM 12809] |
| KOG | KOG0882 | 0 | Cyclophilin-related peptidyl-prolyl cis-trans isomerase |
| nr | gi|743863114|ref|XP_010943717.1| | 0 | PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 [Elaeis guineensis] |
| Swissprot | tr|Q8W4D0|CPY71_ARATH | 0 | Peptidyl-prolyl cis-trans isomerase CYP71 |
| trEMBL | tr|I1LTT0|I1LTT0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G30780.1} |
| TAIR | AT3G44600 | 0 | cyclophilin71 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000084 | 3939000 | 3957624 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017369
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.31 | WD40 | 62 | 86 | 0.045 |
| PF00400.31 | WD40 | 96 | 130 | 0.043 |
| PF00160.20 | Pro_isomerase | 467 | 617 | 7.90E-55 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000413 | Biological Process | protein peptidyl-prolyl isomerization |
| GO:0006457 | Biological Process | protein folding |
| GO:0003755 | Molecular Function | peptidyl-prolyl cis-trans isomerase activity |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 100.580 |
| SRR2545915 | Juvenile tuber | 86.220 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 40.080 |
| SRR5643514 | five period of Gastrodia elata | 36.040 | |
| SRR5643515 | five period of Gastrodia elata | 34.320 | |
| SRR5643524 | five period of Gastrodia elata | 36.630 | |
| SRR5643525 | five period of Gastrodia elata | 60.330 | |
| SRR5643528 | five period of Gastrodia elata | 53.260 | |
| SRR5643658 | five period of Gastrodia elata | 61.090 | |
| SRR5643659 | five period of Gastrodia elata | 53.630 | |
| SRR5643660 | five period of Gastrodia elata | 60.050 | |
| SRR5643661 | five period of Gastrodia elata | 57.260 | |
| SRR5643662 | five period of Gastrodia elata | 55.390 | |
| SRR5643663 | five period of Gastrodia elata | 56.910 | |
| SRR5643664 | five period of Gastrodia elata | 63.460 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 51.960 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 48.100 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 43.390 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 71.430 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 62.980 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 78.440 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 56.570 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 57.710 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 33.030 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 40.850 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 43.940 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 43.940 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 62.27 |
| Juven | Juvenile tuber | 56.12 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 49.32 | |
| Mother_Juven | Mother tuber of Juvenile | 52.20 |