Detail information of GWHGAAEX017372/evm.TU.scaffold_80.193
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|166362769|ref|YP_001655042.1| | 3.00E-35 | low molecular weight phosphotyrosine protein phosphatase [Microcystis aeruginosa NIES-843] |
| KOG | KOG3217 | 2.00E-57 | Protein tyrosine phosphatase |
| nr | gi|695013192|ref|XP_009393374.1| | 2.02E-70 | PREDICTED: low molecular weight phosphotyrosine protein phosphatase-like [Musa acuminata subsp. malaccensis] |
| trEMBL | tr|M0SGZ3|M0SGZ3_MUSAM | 8.00E-71 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P22770_001} |
| TAIR | AT3G44620 | 2.00E-57 | protein tyrosine phosphatases;protein tyrosine phosphatases |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000084 | 4010909 | 4029283 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017372
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01451.20 | LMWPc | 37 | 172 | 1.60E-29 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01104 | E3.1.3.48 | Two-component system | map02020 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006470 | Biological Process | protein dephosphorylation |
| GO:0004725 | Molecular Function | protein tyrosine phosphatase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.010 |
| SRR2545915 | Juvenile tuber | 10.720 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.150 |
| SRR5643514 | five period of Gastrodia elata | 16.330 | |
| SRR5643515 | five period of Gastrodia elata | 12.990 | |
| SRR5643524 | five period of Gastrodia elata | 14.640 | |
| SRR5643525 | five period of Gastrodia elata | 11.680 | |
| SRR5643528 | five period of Gastrodia elata | 10.880 | |
| SRR5643658 | five period of Gastrodia elata | 13.310 | |
| SRR5643659 | five period of Gastrodia elata | 10.000 | |
| SRR5643660 | five period of Gastrodia elata | 8.960 | |
| SRR5643661 | five period of Gastrodia elata | 9.430 | |
| SRR5643662 | five period of Gastrodia elata | 10.790 | |
| SRR5643663 | five period of Gastrodia elata | 12.980 | |
| SRR5643664 | five period of Gastrodia elata | 13.200 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.100 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.580 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 14.570 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.580 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.170 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.720 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 9.730 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.860 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 18.440 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.220 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 19.840 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 19.840 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.05 |
| Juven | Juvenile tuber | 11.18 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 33.06 | |
| Mother_Juven | Mother tuber of Juvenile | 20.24 |