Gene detail

Detail information of GWHGAAEX017373/evm.TU.scaffold_80.194

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2071	2.00E-78	mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11
nr	gi\|672188828\|ref\|XP_008813679.1\|	0	PREDICTED: uncharacterized protein LOC103724256 isoform X2 [Phoenix dactylifera]
Swissprot	tr\|Q0WPF2\|PCFS4_ARATH	6.00E-51	Polyadenylation and cleavage factor homolog 4 {ECO:0000305}
trEMBL	tr\|M0RVJ0\|M0RVJ0_MUSAM	9.00E-176	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P26100_001}
TAIR	AT2G36480	2.00E-78	ENTH/VHS family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000084	4030412	4040008	+

Transcript Sequence
>GWHTAAEX017373 ATCACCCATAATATTTTATCCGGCATTAAAGCCATAGTTTATAATACTCCATAAATTGCAGGATTAAATTGCAATTTTCAAGTGCGAGAGGAAATTGCCTAAATATCGACGTAACAAAGACCGCCGCACAATCTGCTGCCCCTCCAGCTCAAATCTTCACGTCCGCCGCCGCCGTTCCCTTATCGTTTCTCACTTGTTCTCAAGCTCCTCTTCATCTCCTCTTTCCTCTCTTCTCTTTCTCTCTCTTTGTCATCCATGTCCTCCATGATCCTCTTAGAGATAGCGATTAGGGTTTCGCATTGATCCCCGGATATGAATCCCCGATGCGAATCCCCTGAAATCCTATGGCACATGAATCTTTACTTGTTGACTGATTCTTTGATCCGCTAGAAGGTTAACCCGATCTCCAGTGTATGGAGATGGAGGCCCCTCGCAGATCCGCCTTGGACCGATTGAGGGAGCTGAGCACGAAGAAACCTAGACTATCCGAGGATTCAGAGCGGGAGCGGAATTCCGCCGCTGGTATCAACTCCGATCGGAGTCGTCCCTACGCGCAGGCGAGGTCTGCTGTCGGCGGCAGCGGAGGCAACCCCAGATTTAGGGCGAGCGAGAGGGAGGACCGGGAGGAGGTCGGACAGGGAAGAGGGGGTGTGTCTTATCAGCAGCAGCAGGAGCTTGTTGCGCAGTACAGGACGGCACTCGCAGAGCTAACTTTTAATTCCAAGCCTATTATTACGAATCTTACCATTATTGCCGGGGAGAATCTCCATTCTGCTAAGGCTATTGCTGCCACTGTCTGTGAAAATGTTCTCGAGGTTCCTAGTGAACAAAAATTGCCATCTTTGTATCTCCTTGATAGCATTGTGAAAAATATTGGAAGTGATTATATTAAATACTTTGCCGCGAGATTACCGCATGTATTCTGCAAAGCCTACAAGCAAGTTGACCCTTCCATACATCATAGCTTGTGGCATCTATTTAGAACATGGAAAGGGGTATTCCCCCCTTCTTGCCTTCAATCAATTGAGAACGAATTGGGATTTCAAAATTTATTAAATGGTTCATCTGGAGGAACAGGAACAAGACCCGATGCTCAAGCGCAAAAAGCTCCGCACAGTATTCATGTCAACCCAAAGTATTTGGAGGCCAGGCAACGCCTTCAGCAGTCTGCAAAGGGAAAGGAAATAAGTAATGAAGATATTGGTGAAGAAGCTGCTACGTCTGTTGGTGATACAGAAAGACCCATCAGAACCGCCATCACCGGGACTACTCGGCAGTGGTCTGAGATGTCTAATAAGAATGCCCAACTCCCTCAAAGGGAGCAGCCTTCCGACTTTATTAATGAGAGACAAGGCTACAAGGAAACAAGAGAATCCAGGTTTTCTTCTTCTAAAATCTCACAGCAACAGGATGTTGGAGCGGGGAGGCTCATTAGCAGGGGAAAGGAGTTAGATGAAGTGGGGAGGACTGCCGATCAGATCAATGACTCAGATGAGCCAAACAAACCTTATTTTGAGGCTAGCGGGGCTTATAGACAAAATGGTCTTGATGCAGATCATGCTTATGGTGGCTATAGTAAGTCTTTAGGGCCTGCTTCGAATAATAGCCAGCTGCCTTCGATCCATTTGAATCGAACAAAATGGCCGTTGTCAAAGAACTGGAAAACATCTGAGGAGGAAGAGTACATATGGGATGATGTTCGTTCCCGTTCGACGGATTATGAAGGAGCGACGGGCAATAAAAGCAACTGGAGTACTGAGGATCCCGAGAAGCCAATCGGCTTGCAGAGCCGCAAGTGGTTGTCTCTTTCTGAGAATGAACAGGCTGAGTCTAGACTAAATAAAACCGAAGCATTTCAATTGCGGTCGAAGATCCCTGGAATAGGAGATAAGATTCATTTTCCAAGAGACTATGAGGAGCATTATTCACAGCATAACAGCCAGGAGATTGAGCCAAGGGCGAGCAAGAGCTCCTGGCCTCTGCCTTTGCATGACACATCGCTTCCGGCTCTCGGGTTAGACCCCAACAAAACCTCGAGAGATTCAGGACAAATAGAGCGCAGGCCGACATCTTTTGCCGGCGCTTTATCAGCAAAGGATAGCTCAGGAATGCCCAGAACTGGATTTCAATCTGCTCTTCCTTCAAGCTTGGGCTCTTCCTTAGATGTCCAAGGGTCAGGTGGAATTTTAGGGCATCAGAGGCAACTGCCTCTTCGGTCTCCTTCTCCCACAGCCCTCCCTTCTGTCCCGCCTGCCCCCCTTCAACAGCAGAAGCTACGTGGTCTAATCGATCAAGATTATCTACCGTCTCTCTCATCCCAAATAGGTCAGAAATCCAGTGAGCCTGCGGATCATTTTAGCCGGGATCCATTTCCATTACCAGTCAGCTCTGACAACCCTAGTCAGAATACCTCTTTGAATTCGCAGTCATATCAGTTTAATCGGGATCTGCAGGCTGTTCGTAATGAGGCTTTGGCATCTGCGTCTCAGGGTTTTAAGGGCAGCGAGCTGAAAGGGTTTTCGGGCCTGATGCACTCTAGTATTCCCGTTGATGTTTCCAGGCAGCCCAGCACCAACAATCTCTTGGCCGCAATATTAAAGTCCGAAATTTTATCTAAAAAACCCTCAAATATACATCCCCCTCTTCCTAGCGGACCTCCCCCCACCCAAGCACTGGCCTCCACCACCCCTTTGCCAACCTCCTCTGCAGAAACAATGACCCCTCCTCCTTTAATAGGAGGCATGCTGCCGCCCCTGCCGCCCGGCCCTCCGCCTTCCTCAACGTCGGCAGCAGGTGCCTCCTCTCAAGCTGCCGGCCTCAATCCGCTCTCAAGCCTCCTGAGCTCATTGGTTGCAAAGGGCCTAATAACTTCTGCATCAGCACAATTGCCGACTTTCACATCAAGTCAGGTGTCAAAAGAGAGCTCAAGCCAGAACAGCGATCCGGACGGAAGCGCGTCCACCCCGTTGCCCCCTTCTTTGAAAGAGCTTCCGGCCTGCGATCCACTCGCAGAATCTGACAATATGATAGGTCTTCAATTCAAAACGGAGGTCATTCGTGAGTTTCATCCTTCGGTGATCGACAGCCTGAGGCTTGGGCACCACGGTCGCTCGGACTGGCACGGTTCGATTAACTCGGAAATAAACGACGTTGACAGAGTGTGCCGGAGATGGTATTCGCAAGCCAGCAGTTGGGTTTCTGGCAACGTCGAACGATCGTGCGGGCCGGCATCTACCCCGCCTCCCGAAGAACCCCTAGAGCCTATGGTCGCTGCTGACGAGAGCCAGTGCATATGCGCGCTTTGCGGAGAACCGTTCGAGGACTTTTATTCCCTTGAGAGGGATGAGTGGATGTACAGAGGGACTGTATATTTGAACTCAACGGAGGAGAAATGTGTCGCCGGAGAGACGCAGAACCGCATGGCTGAGGGCCCCATTGTGCATGCCAAGTGCATCTCCGTGCTGCCGCATAGCTGACTCTCGTGGTGGAGCTCAGTTTCCGGTATGACCTGTGTTTTGCATCTGGATATTCTTGGACAAGATGCTGGCGGATATGATAGTAAACAAAGATCATAAAGGTTTGCGGTCCCCCCATCGCTATTGCTATTCTTCTATCAAACGGTTGAGAAAAAAAAAAAAAAAGGCAACGTGAAACAACAAAATTTTCATCCATGGACGGATTTTAGGTCCTCCCTTTTTTTTTTTTTTTT

Network for GWHGAAEX017373

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04818.12	CTD_bind	140	193	2.50E-08

Protein Sequence

>GWHPAAEX017373
MEMEAPRRSALDRLRELSTKKPRLSEDSERERNSAAGINSDRSRPYAQARSAVGGSGGNPRFRASEREDREEVGQGRGGVSYQQQQELVAQYRTALAELTFNSKPIITNLTIIAGENLHSAKAIAATVCENVLEVPSEQKLPSLYLLDSIVKNIGSDYIKYFAARLPHVFCKAYKQVDPSIHHSLWHLFRTWKGVFPPSCLQSIENELGFQNLLNGSSGGTGTRPDAQAQKAPHSIHVNPKYLEARQRLQQSAKGKEISNEDIGEEAATSVGDTERPIRTAITGTTRQWSEMSNKNAQLPQREQPSDFINERQGYKETRESRFSSSKISQQQDVGAGRLISRGKELDEVGRTADQINDSDEPNKPYFEASGAYRQNGLDADHAYGGYSKSLGPASNNSQLPSIHLNRTKWPLSKNWKTSEEEEYIWDDVRSRSTDYEGATGNKSNWSTEDPEKPIGLQSRKWLSLSENEQAESRLNKTEAFQLRSKIPGIGDKIHFPRDYEEHYSQHNSQEIEPRASKSSWPLPLHDTSLPALGLDPNKTSRDSGQIERRPTSFAGALSAKDSSGMPRTGFQSALPSSLGSSLDVQGSGGILGHQRQLPLRSPSPTALPSVPPAPLQQQKLRGLIDQDYLPSLSSQIGQKSSEPADHFSRDPFPLPVSSDNPSQNTSLNSQSYQFNRDLQAVRNEALASASQGFKGSELKGFSGLMHSSIPVDVSRQPSTNNLLAAILKSEILSKKPSNIHPPLPSGPPPTQALASTTPLPTSSAETMTPPPLIGGMLPPLPPGPPPSSTSAAGASSQAAGLNPLSSLLSSLVAKGLITSASAQLPTFTSSQVSKESSSQNSDPDGSASTPLPPSLKELPACDPLAESDNMIGLQFKTEVIREFHPSVIDSLRLGHHGRSDWHGSINSEINDVDRVCRRWYSQASSWVSGNVERSCGPASTPPPEEPLEPMVAADESQCICALCGEPFEDFYSLERDEWMYRGTVYLNSTEEKCVAGETQNRMAEGPIVHAKCISVLPHS

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14400	PCF11	mRNA surveillance pathway	map03015

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	29.690
SRP064423	SRR2545915	Juvenile tuber	26.880
SRP108465	SRR5643513	five period of Gastrodia elata	34.320
	SRR5643514	five period of Gastrodia elata	27.550
	SRR5643515	five period of Gastrodia elata	31.300
	SRR5643524	five period of Gastrodia elata	30.510
	SRR5643525	five period of Gastrodia elata	27.230
	SRR5643528	five period of Gastrodia elata	26.600
	SRR5643658	five period of Gastrodia elata	26.780
	SRR5643659	five period of Gastrodia elata	32.730
	SRR5643660	five period of Gastrodia elata	40.900
	SRR5643661	five period of Gastrodia elata	33.990
	SRR5643662	five period of Gastrodia elata	37.280
	SRR5643663	five period of Gastrodia elata	36.940
	SRR5643664	five period of Gastrodia elata	39.840
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	39.320
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	39.090
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	35.250
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	49.920
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	46.830
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	51.660
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	45.680
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	42.330
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	30.230
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	35.510
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.640
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.640
SRP279888	Gastro	Gastrodia elata tuber	45.66
	Juven	Juvenile tuber	82.35
	Mother_Gastro	Mother tuber of Gastrodia elata	53.73
	Mother_Juven	Mother tuber of Juvenile	64.59