Detail information of GWHGAAEX017376/evm.TU.scaffold_80.197
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2447 | 0 | Oligosaccharyltransferase, delta subunit (ribophorin II) |
| nr | gi|672123739|ref|XP_008785235.1| | 0 | PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2-like [Phoenix dactylifera] |
| Swissprot | tr|Q5N7W3|RPN2_ORYSJ | 0 | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 (Precursor) |
| trEMBL | tr|M0ST65|M0ST65_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P29530_001} |
| TAIR | AT4G21150 | 0 | ribophorin II (RPN2) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000084 | 4069983 | 4088512 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017376
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF05817.13 | Ribophorin_II | 10 | 685 | 5.70E-177 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12667 | SWP1, RPN2 | Metabolic pathways | map01100 |
| N-Glycan biosynthesis | map00510 | ||
| Various types of N-glycan biosynthesis | map00513 | ||
| Protein processing in endoplasmic reticulum | map04141 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006487 | Biological Process | protein N-linked glycosylation |
| GO:0008250 | Cellular Component | oligosaccharyltransferase complex |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 148.140 |
| SRR2545915 | Juvenile tuber | 154.360 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 107.950 |
| SRR5643514 | five period of Gastrodia elata | 109.470 | |
| SRR5643515 | five period of Gastrodia elata | 96.200 | |
| SRR5643524 | five period of Gastrodia elata | 111.720 | |
| SRR5643525 | five period of Gastrodia elata | 71.250 | |
| SRR5643528 | five period of Gastrodia elata | 76.610 | |
| SRR5643658 | five period of Gastrodia elata | 72.080 | |
| SRR5643659 | five period of Gastrodia elata | 99.370 | |
| SRR5643660 | five period of Gastrodia elata | 90.230 | |
| SRR5643661 | five period of Gastrodia elata | 94.930 | |
| SRR5643662 | five period of Gastrodia elata | 76.980 | |
| SRR5643663 | five period of Gastrodia elata | 93.160 | |
| SRR5643664 | five period of Gastrodia elata | 74.130 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 156.990 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 134.570 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 151.080 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 143.080 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 147.660 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 149.520 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 155.800 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 152.410 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 163.080 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 151.050 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 150.590 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 150.590 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 106.07 |
| Juven | Juvenile tuber | 157.77 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 70.45 | |
| Mother_Juven | Mother tuber of Juvenile | 112.95 |