Gene detail

Detail information of GWHGAAEX017378/evm.TU.scaffold_80.199

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1904	6.00E-79	Transcription coactivator
nr	gi\|743867190\|ref\|XP_010905251.1\|	0	PREDICTED: HUA2-like protein 3 isoform X1 [Elaeis guineensis]
Swissprot	tr\|F4IN78\|HUAL3_ARATH	9.00E-79	HUA2-like protein 3
trEMBL	tr\|M0T7G5\|M0T7G5_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P16170_001}
TAIR	AT2G48160	6.00E-79	Tudor/PWWP/MBT domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000084	4143355	4184234	+

Transcript Sequence
>GWHTAAEX017378 CCATGTTCTTTTTACCCAAACCCTTGACAAGAAATTGGGAGTTCTTTCCACTGTCACGGCAGAAATCGGTTCTCCGTTTCTCTACTGATCTCGCTATCTCACATAATTCTCAATTTTATTACCTGGGTGTCTCTCACCATCTGCTACTGTCACCTTCTCCCCTGAATCTGGCGAAATATAGTCTAATATTCTCTCCTCTTAAAAAACGCGGGGAGATCTCTTACAAGAGGCGTCTTCTGCTCATCCAGATTCAACGATCGATTTTGCCCTAGGTGGCGTCTTCCGCCGATGGCTTCAAGTCGGCGGAAGGGATCTGCAAGGGCAGCAGCGGCGGCGGCGGCAGCCTCCCGGAAACAGTGGAAAGTCGGGGATCTCGTTCTTGCCAAGATGAAGGGTTTCCCTGCATGGCCGGCCATGGTAAGCGAACCTGAGAAATGGGGGTTCTCATCCGATCGCAAGAAGCTCCTTGTTTACTTTTATGGAACCAAACAAATTGCCTTTTGTAACCATGCTGACATAGAAGCTTTCACAGAAGAGAAGAAAAGATCCTTACAAATTAAGCGTCAGGGAAAAGGGGCAGATTTTGTTCGTGCTGTTGAGGAAATAATTGATGTCTTTGACTCTCTAAAGATACAAAATCTTGAATCAAGTGTTGGAGGCCATGATGGCAATACATCAAATCAAGGGCACCTAGAAGATTCAGGAATTGATAGTTTTGGAAAGACTATGGAGCCGAGTTCATTTCTCAACCATCAGTTAGAAGTTGCATCCATTGCAGAATGTGGTGACAAGGTAAAAGTGGATGGCAGTCCTAAAAGTTTGATAGACGGTGTAAACAACAATAGAAATTCTGTAGTTGATGATTCAGCCAAAACAATTTCTATCCTTGATCAACTCAGACAAATTCCGCTGTCTAGTACACCGACTACTAGAAAAAGGGCAAGGGACGCACTCTTGCCAAGTTCTGTTACCAAAAGTTCTTCATCACTCCGGAGGTCTAGAAGTTCATTAGTGAACAACTTGACTAAATCTCAGAAATCATCTATGCAGGCTGATGCTAAACATATTGTTGATTGCTCAGCTCGTAATATTATACTGGAGGAACCTGCATCACAAACTATTGATAGAGGAGAACATCTTTCCAATGGCAGTGCTGAGGTTTCACCTATCTTAACCCAAGCCCTGCTTGAAGATGTTCGGGCTGTTAGAATTGATGGAACAAATTCATGTAATGGAAGCGCACCAGAAGCTAGTAAGAAATTTGAATTCCGTGATAATGATACAGTCTCAAACACAGTACCAGCAGGAGATGTTAGACTAAGTAGTGAAGTCGAGACCTCTTTAAATGCTGAAGTCGTCAATACAATAATGAGAAAATCCTTCGGAAAACTAGTCAACAATGCTAGAACATGTGATGAGAAGGATAGAGAAATGGATATACCAGTCGATGGAAGAAGCCTTTCTGATTCAAATTCTAGAAATGACACAACTGACAAATTTAGTAATGCAAATGGTGATGAACACCTTCCGTTGGTGAAAAGGGCAAGGATCCGAATGGGCAATCCTCTGGTAGAGGAGGAAAATTTGAATGATTCAGCAGGATCAGATGAGAAATCTGGCAATCTTGTTATTTCAAATGGACATTATGGGAGCATCACATTCTCCAGCCCTACAAACAATTGTCAGCTGCAAAATGTCCCACTTAAAAGGATCTCACCGGCTGCTAGGAAATTTGCAAGATCTTCAACAAACGGTTCTTCCCACACTAATACTGAAAGTGATTCGCTGTCATGTAAGATGAACAAACACCATATGATGTTGGATGTTGAAGCGGCCCTACCTCCATCAAAGCGCTTGCATCGTGCATTGGAAGCCATGTCTGCTAATGCAGCTGAAGCTGAAACTGATTGCCCACAAGCCCCATGTGACATAGTTATAAAATCTACCGAGTGCTTAGGTTCTTCAGCTGAAATTATACATAGCATTGATGAGAGTTCTAGTATTCCCGTGAAACCACTACCTTTGAAAGCTTCTAATACAGTTGCATTTGGCAACAATACATGTGATTTATCATCAAGCTCAACAGTACAAAACCTAGTAGCTTGCTGTTTAGGCTCATTAGAAGTAACACCTGTCCACACTAATCCTGGAAAAGAGACGAACATCCTTGTGAACGCTTCTGTTGAAATTGTAACAGATGAAGATAATGATAGGTTTCTGGTAAAGCAAGGGACCACCCACGCTGAAGGTGTCAAGATCTTACCCAAGGCAACTGGAACTCGGAATTCTCAACAATTTGTTTTTTCTCCATCAAGTGGAGCTGCTGCAGCTATGTCAACCACTACTACTGAATGCACAACTAGTGAAATTGATTGTACTGCTGCATGTTCAGACATTATAAATGTTGACTCTTCTCTTAATGATATGAACGAAGTCCCTTCAGTTTCATCGGTTGCCAATTTTTGTTCCTTGGTCAGTGATAGTAATGGAGTTGTTGCAGCTTCGGTAACTACTAATTCCAGTTCCACAGTAAATGGTATTTCGATGGCCTCAGTTTCAAGGTTACAATTTGAACAAACTTCTCTTATTAGAGACATGCAGAATGTTGCACCAGAACTTAAGCATAAGTACAAGGATAGGACCATTTTGTCTATGTTAGCTCCTATTAAGGATTTGATTGCCGCAGCACAAGCTAAGAGATTTATATCGCGATCTGCTTCCATCTGTGACCGTGCTATAGATGGTAAGGTTGCTTTGGATGTTGTAGTAAGCCCAACTTTAATAAACAAGGAAGGTTCTTCAGTGCGGGGTTCACCTTCAAACCCCATGTTCTACCACAGACCTGCTTCAGATGATGATGCTAGCTACCTGCGGAATAGCAGCAAAATGCCTCTTGATGGGTCTTATAGGAGAGGGGTTAGCAAGTGTGCTAACCATTCTGATGCAATTGCAGCACGCAGATGCTTTGAATCTTTGCTCTGCACTTTATCAAGAACAAAAGACAGCATAGGTCGAGCAACTCGTCTTGCAATTGATTGCGCAAAATATGGTATTGCTGGAGAGGTGATCGATATCCTTCTTCAGTATTTGGAAAAGGAATCAAATTTGCACAGACGGATAGATCTTTTCTTCCTTGTTGATTCGATTACTCAGTGTTCCCGGTGCCAAAAAGGTGGACCAGGGGATGTTTATCCTTCTCTTGTTCAATCTGCACTGCCACGCTTGTTGGCTGCTGCTGCACCTCCAGGGAATGGAGCATTAGAAAACCGGAGACAATGTCTAAAGGTCTTAAGGCTATGGCTTGAGAGGAGGACTCTTCCTGAGTTCTCACTTCGACACCACATTAGAGAACTTGAATATGGAAGTGAAGCTTCTTTGAGTATTTCATATTCTAGGCGGCCTCCCAGAACGGAAAGGCCTCTTAATGATCCAGTGAGAGAAATGGAGGGAATGCTTGTTGATGAATACGGAAGCAATGCCAGTTTTCAGCTCCCACAGTTTCTTGATACACGAATTTTGGAGGATGACGAGGGGAGTGCTTCGGATGATAAAAGTTTTGAGGCAGTTACACCGGACAGAAATGCTGAAATAAACTCTGAAAAGGGAGTCACTCTAAAATCTTCTGAAAAGCACCGGCTTATCTTAGAAGATGTTGACGGAGAGCTTGAAATGGAGGATGTTTCTCCGCCTTCCGGACCCGAAGCGGTCCTTTCCACATGTCATTTTAAAGGTGTTGAAATGCCGAGCAATTGCAACCATAAATGTGAGCAAAACAATTTATTATCTTTTGCTCCTCCTCTTCCTGAGGAGCGGCCACCATCACCCCCTCCTTTGCCTTCTTCTCCGCCACCACCAAGTTCTAATGCTATAGGAAAAGCTGCTGACCCATTGGTGTCATTAACTGCTGTTGCCGATAGTGCTGATTTTTGTGCTAGCTATGCTGCTCCTAATCAACTTCTGAGACCAATCAGTCAACAGCAGCGCAACAGTTTGCATTGCAGCCCACCTTTATCAGATAGGCCCTCTTACTATTCCCAAGGATATGCAGGACATCCACAGCCAATACCACAGCTTCTTTCTTCTTGCACTTCTTCAGGCTCATACAGCAACCAGGGAGGTTCTCAGCCTGTGGTGCCGGTTGGGAGCAACTCTCAGTCGATTGTAAATAATAAGGTCTATCACCTGCAGCCACCTCCGCCAGTAGTTTCAAACCAGTTTTCGTACATACAAGCTCAGCCGCCTCACAGAATGCTAGCTTCAAATAATCAGTCTTCCTACTCGGATAGATTTCATCAAGTGCACGATAATCAAAGGGGCACCTTCTATGGGGATGGAGATCATAGCGCCTTTCATCCATCTGTTTATCATTCAGAAGCACTTGTTCATCACGCTGATGCGGGAGAAATACCACATGCTCCTTCCTTTTATGGCCCTCGCTCTGACATATCTTCTGCTCATTGTCAAGACTGGCCTTACCCTCCTAGAACTTCTAGTTATCCTGCACCTGCTTCAAGATCCTCATTAGAAGACCCAACGATTTCAGGAGTTTCTGCAGGTGCACATGATTGATTCTAGCTTTTCTTTGTTCATTTTGTAGCTATATCAAAATATCCATTGTTAGGGCCTTTAAATTTTGAATTCCTGCCTTTGCAACACCAGCCTATTGGAGATCAAGATGACTCGCTCTATCACGGTCCGGCACTTCATTCGCTCTGTCGTGTTGCTTTAATTCTGATTTTTTTTTTCGATATTCTTGCAAAAATGACTTTGGTTGGATGCCCTGAGAATTTTCAATGATATCGGGTAGTCGTTGTCTTCTTCTTCTTCTTGTGCTGCTGTGCTTGGAGGTAAAACTGAATACATGCAATCAGCATCACTGTACATATGTATTTTACCCCTAATCCTCCAAATGCAATTTATATTCTATTTTCGTTCGGAGATGTATCATTTCTTCTTACTGTTTGGCCTGGATAATCTTCTGATTCAGAATCAGATTTGATAGTCCTAGTTTAAAGTTCTCTCTCTCTCTCTCTCTCTCT

Network for GWHGAAEX017378

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00855.16	PWWP	25	109	6.20E-17
PF04818.12	CTD_bind	943	1008	1.40E-05

Protein Sequence

>GWHPAAEX017378
MASSRRKGSARAAAAAAAASRKQWKVGDLVLAKMKGFPAWPAMVSEPEKWGFSSDRKKLLVYFYGTKQIAFCNHADIEAFTEEKKRSLQIKRQGKGADFVRAVEEIIDVFDSLKIQNLESSVGGHDGNTSNQGHLEDSGIDSFGKTMEPSSFLNHQLEVASIAECGDKVKVDGSPKSLIDGVNNNRNSVVDDSAKTISILDQLRQIPLSSTPTTRKRARDALLPSSVTKSSSSLRRSRSSLVNNLTKSQKSSMQADAKHIVDCSARNIILEEPASQTIDRGEHLSNGSAEVSPILTQALLEDVRAVRIDGTNSCNGSAPEASKKFEFRDNDTVSNTVPAGDVRLSSEVETSLNAEVVNTIMRKSFGKLVNNARTCDEKDREMDIPVDGRSLSDSNSRNDTTDKFSNANGDEHLPLVKRARIRMGNPLVEEENLNDSAGSDEKSGNLVISNGHYGSITFSSPTNNCQLQNVPLKRISPAARKFARSSTNGSSHTNTESDSLSCKMNKHHMMLDVEAALPPSKRLHRALEAMSANAAEAETDCPQAPCDIVIKSTECLGSSAEIIHSIDESSSIPVKPLPLKASNTVAFGNNTCDLSSSSTVQNLVACCLGSLEVTPVHTNPGKETNILVNASVEIVTDEDNDRFLVKQGTTHAEGVKILPKATGTRNSQQFVFSPSSGAAAAMSTTTTECTTSEIDCTAACSDIINVDSSLNDMNEVPSVSSVANFCSLVSDSNGVVAASVTTNSSSTVNGISMASVSRLQFEQTSLIRDMQNVAPELKHKYKDRTILSMLAPIKDLIAAAQAKRFISRSASICDRAIDGKVALDVVVSPTLINKEGSSVRGSPSNPMFYHRPASDDDASYLRNSSKMPLDGSYRRGVSKCANHSDAIAARRCFESLLCTLSRTKDSIGRATRLAIDCAKYGIAGEVIDILLQYLEKESNLHRRIDLFFLVDSITQCSRCQKGGPGDVYPSLVQSALPRLLAAAAPPGNGALENRRQCLKVLRLWLERRTLPEFSLRHHIRELEYGSEASLSISYSRRPPRTERPLNDPVREMEGMLVDEYGSNASFQLPQFLDTRILEDDEGSASDDKSFEAVTPDRNAEINSEKGVTLKSSEKHRLILEDVDGELEMEDVSPPSGPEAVLSTCHFKGVEMPSNCNHKCEQNNLLSFAPPLPEERPPSPPPLPSSPPPPSSNAIGKAADPLVSLTAVADSADFCASYAAPNQLLRPISQQQRNSLHCSPPLSDRPSYYSQGYAGHPQPIPQLLSSCTSSGSYSNQGGSQPVVPVGSNSQSIVNNKVYHLQPPPPVVSNQFSYIQAQPPHRMLASNNQSSYSDRFHQVHDNQRGTFYGDGDHSAFHPSVYHSEALVHHADAGEIPHAPSFYGPRSDISSAHCQDWPYPPRTSSYPAPASRSSLEDPTISGVSAGAHD

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	38.100
SRP064423	SRR2545915	Juvenile tuber	32.810
SRP108465	SRR5643513	five period of Gastrodia elata	26.760
	SRR5643514	five period of Gastrodia elata	27.200
	SRR5643515	five period of Gastrodia elata	31.580
	SRR5643524	five period of Gastrodia elata	29.610
	SRR5643525	five period of Gastrodia elata	42.930
	SRR5643528	five period of Gastrodia elata	34.550
	SRR5643658	five period of Gastrodia elata	40.070
	SRR5643659	five period of Gastrodia elata	28.770
	SRR5643660	five period of Gastrodia elata	31.340
	SRR5643661	five period of Gastrodia elata	26.660
	SRR5643662	five period of Gastrodia elata	30.700
	SRR5643663	five period of Gastrodia elata	28.810
	SRR5643664	five period of Gastrodia elata	30.870
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	24.420
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	30.890
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	25.150
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	24.180
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	24.050
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	27.650
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	24.940
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.330
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	22.600
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.360
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	24.190
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	24.190
SRP279888	Gastro	Gastrodia elata tuber	26.09
	Juven	Juvenile tuber	33.53
	Mother_Gastro	Mother tuber of Gastrodia elata	25.37
	Mother_Juven	Mother tuber of Juvenile	41.13