Gene detail

Detail information of GWHGAAEX017381/evm.TU.scaffold_80.202

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|297622110\|ref\|YP_003710247.1\|	8.00E-112	glycosyl hydrolase [Waddlia chondrophila WSU 86-1044]
KOG	KOG0470	0	1,4-alpha-glucan branching enzyme/starch branching enzyme II
nr	gi\|672158779\|ref\|XP_008799133.1\|	0	PREDICTED: isoamylase 2, chloroplastic [Phoenix dactylifera]
Swissprot	tr\|Q8L735\|ISOA2_ARATH	0	Isoamylase 2, chloroplastic (Precursor)
trEMBL	tr\|W1PMD1\|W1PMD1_AMBTC	0	Uncharacterized protein {ECO:0000313\|EMBL:ERN08315.1}
TAIR	AT1G03310	0	debranching enzyme 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000084	4208468	4211137	+

Transcript Sequence
>GWHTAAEX017381 ATGGCTACGTTTTGCTCACCTTATGCATCACAAATTTCAAATTTAAATGCTGAAGCCATAAAACATGGAATGATTGGGCCTGCTTATGTTTGTAGTAAAAGAATAATCCCCGTTATGAAAAAAGGATATGTTCAGAGACATAATAAAACATGTAGAAGAATATTTTTGCATGACGCTTTAAATAGTTCCTTACAAATTCGGACATCTGAAATGTTTGCAATTGCTAAAAGCAGCCGCAAGGAAGAGGCTCAGCCAGTGTTGGAGATGACTTCTAAGTTTGAGAAGGAAAACAAGGGAGACTCTTATTTGTTTAGAACTGAATTTGATGGGCTGGTGAAGGTGTTTGTAAGAATCATTGAAATGAAATATACTGTTTTCATCGAAGTTCAGCAGTCTATGACGAGTGCTAATTTGATACTTCTATGGGGTATGTTTATATCTGATTCATTAGTGCTTCGAGGTCCAGATTCCAACTTTTCAGTTTCTTCTGGTGTTAAGTTAAAATTGGGAGGAAGTCAACATCCCATGAGGATGCCATTTACTTGGGACTCATGCAAGCATGTGGTTAAGCTGGAGTTTGATTACAATGATGTACCTTTCTACCTTTCATTCTTGCTTCAGCCTAATGGCACTGGCAGTGAATCGGTTATAAGAACACATAGAAAAACAAACTTTTGTGTACCTGTGGGCTTAGGCCGAGGGTTTCCTATGGACCTTGGTGTTTCTTTATCCAGCGATGGATCTGCCAACTTTTCTCTATTTTCAAGGAATGCAGAGAGTGTAATGTTGTGCCTCTATGAGAGCGAAACAAGTGTGCCTTCTTTGGAAATTGCACTGGATCCATATGTTAATCGCACTGGTGATATTTGGCATGTTTCTATTAATAATATCAGAAATTGTATTGGATATGGTTATCGTTGTAAAGGAGAAAAAAGTGGTAATACAAGGAATAGATTTAGTGTTCCTCACGTTCTTTTGGATCCATATGCTAAGTTGATTGGAAACTTATCTTCTTGTCAAAATGCACTGACATCTACGGCCAACTGCCTCGGGTATCTATGGAAGGAGCCTAAATTTGATTGGAATGGAGATACCCATCCACAAATACCTAAGGAGAAGTTGGTGGTGTACAGTTTAAATGTTGGACAATTCACAAAGAGCGAGTCTAGCGGACTGGCTGAAAACATTGCAGGAACTTTTACCGGTGTAACTAAAAAAGTGCAACACTTGCTAAACCTTGGAATTAATGCCGTACTGTTAGAGCCAATATTTTCCTTTGATGAGAGGAAAGGCCCGTACTTCCCATACCATTTTTTTTCTCCAATGAATACATACGGTGGTATGGATGAAAGTTTAGCATCTGTATACTCAATGAAGGAAATGGTTAAGGCACTGCATAGACATGGAATTGAAGTTCTCTTGGAAGTAGTTTACACTCATACTTGTGAGGTGCGAGATGATGATAGCCAAATAGTCTCGCTTCGAGGAATTGATAATTCATCATACTATAATCTTGATGGAAATGAAACTTCTAGTGCATTAAAATGCAATGACCCTATTGTTCAACAGATGATTTTGGACAGCCTCCATCATTGGGTGATTGAATTTCATGTTGATGGATTTTGTTTCATCAATTCTTCAGGCTTGATTCAAGGTTCTTCTAAGAGTGACCAATTGCCTCGCCCTCCATTAGTTGAAGCCATTGCCTTTGACCCCATACTCTCTGAAACTAAGATAATATCAGACTGCTGGTCACCACTCGATAAGGCATATAAAAACGCCATATTTCCACACTGGAATAGGTGGGCGGAGATGAACAATATGTATTCCTGTGATATACGGAACTTCATGAGAGGTGAAGGACTACTTAGCCATCTGGCCACTCGGCTTTGCGGAAGTGGAGATATTTTTACAGATTTTAGGGGATCAGCATATTCACTCAACTATATCACAAGAAATACCGGGCTGACTCTCGTTGATTTGGTCAGCTACAGTGGTGAAAATCTTTCTTCAGAAATGAGTTGGAACTGTGGTGTAGAAGGTCCCACAGACAAGAGTTCTGTCCTGGAAACGAGGCTCAGACAAGTTAAGAATTTTGTGTTCATTTTATTTGTTTCATTAGGTGTTCCTGTCATAAGTATGGGTGATGAGTTTGGTTACTCCAAGGGTGGTTCTCTTTCCTACAATGACAGGGTGGTGCCAATCAACTGGAAAAGTCTGATAACTGAATTTAGCATACAAATTACCAAGTTTATATCATTTCTTACTTCACTCCGGAATCGAAGAAGCGACATTTTCCAAAAGAAAATGTTTTATGAAGCTGAAAACATTATTTGGCATGGAAGCAATCAGTCTTTACCTCAATGGAAAAACCCATCATGCAAGTTCCTTGCCATGGAGTTGAAGGCTGAGAATGATGTCAGATCATTAAATTTTTATAATGGGAACTTGTTTCTTGCTTTCAATGCTAGCACTCTTTCAGAGCCGGTAACTTTGCCCAAACTATCAGAACGGTATACCTGGTTTTGTTTGGTGGATACTTCGCTTCCTTTTCCAGATTTCTTCTCAAGTGATTCTGACCTAAATTTCCAGAAGAATGAAGGGTTGTCCTCTTTTGAGCTAAAGCCTCATACCTGTGCATTGTTTGAAGCAAAAATTGCCAATATTTGA

Network for GWHGAAEX017381

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02922.17	CBM_48	239	330	2.90E-12
PF00128.23	Alpha-amylase	398	509	4.60E-10

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH13
Carbohydrate-Active enzymes Family	CBM48

KEGG pathway

KO	Enzyme	pathway	mapID
K01214	ISA, treX	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0003824	Molecular Function	catalytic activity
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.540
SRP064423	SRR2545915	Juvenile tuber	10.710
SRP108465	SRR5643513	five period of Gastrodia elata	7.380
	SRR5643514	five period of Gastrodia elata	8.440
	SRR5643515	five period of Gastrodia elata	5.820
	SRR5643524	five period of Gastrodia elata	7.110
	SRR5643525	five period of Gastrodia elata	9.780
	SRR5643528	five period of Gastrodia elata	7.640
	SRR5643658	five period of Gastrodia elata	12.170
	SRR5643659	five period of Gastrodia elata	7.920
	SRR5643660	five period of Gastrodia elata	7.180
	SRR5643661	five period of Gastrodia elata	5.820
	SRR5643662	five period of Gastrodia elata	8.280
	SRR5643663	five period of Gastrodia elata	11.650
	SRR5643664	five period of Gastrodia elata	8.250
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.820
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.900
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	9.720
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.560
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	9.490
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	10.670
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.520
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	12.600
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.000
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	10.120
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.850
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.850
SRP279888	Gastro	Gastrodia elata tuber	8.19
	Juven	Juvenile tuber	9.68
	Mother_Gastro	Mother tuber of Gastrodia elata	2.15
	Mother_Juven	Mother tuber of Juvenile	3.91