Detail information of GWHGAAEX017382/evm.TU.scaffold_80.203


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|146297575|ref|YP_001181346.1|5.00E-32helicase domain-containing protein [Caldicellulosiruptor saccharolyticus DSM 8903]
KOGKOG10010Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily
nrgi|743882068|ref|XP_010909058.1|0PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 [Elaeis guineensis]
Swissprottr|Q9FF61|SM3L1_ARATH0Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1
trEMBLtr|F6HQN9|F6HQN9_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB57120.1}
TAIRAT5G051300DNA/RNA helicase protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008442184944222506+
Transcript Sequence

Network for GWHGAAEX017382

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF08797.10HIRAN341291.70E-18
PF00176.22SNF2_N2075432.50E-75
PF13920.5zf-C3HC4_35836307.00E-10
PF00271.30Helicase_C6617733.00E-15
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilySNF2
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005524Molecular FunctionATP binding
GO:0008270Molecular Functionzinc ion binding
GO:0016818Molecular Functionhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms15.270
SRR2545915Juvenile tuber8.670
SRP108465SRR5643513five period of Gastrodia elata16.030
SRR5643514five period of Gastrodia elata15.410
SRR5643515five period of Gastrodia elata14.510
SRR5643524five period of Gastrodia elata14.230
SRR5643525five period of Gastrodia elata15.520
SRR5643528five period of Gastrodia elata12.110
SRR5643658five period of Gastrodia elata13.400
SRR5643659five period of Gastrodia elata15.480
SRR5643660five period of Gastrodia elata16.810
SRR5643661five period of Gastrodia elata16.160
SRR5643662five period of Gastrodia elata17.810
SRR5643663five period of Gastrodia elata18.190
SRR5643664five period of Gastrodia elata21.420
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_112.900
SRR6049655Rhizomagastrodiae_C368-T10_good_117.950
SRR6049656Rhizomagastrodiae_C368-T07_good_114.260
SRR6049657Rhizomagastrodiae_C368-T07_good_112.530
SRR6049658Rhizomagastrodiae_C368-T04_good_115.170
SRR6049659Rhizomagastrodiae_C368-T04_good_113.710
SRR6049660Rhizomagastrodiae_C368-T01_good_114.260
SRR6049661Rhizomagastrodiae_C368-T04_good_113.600
SRR6049662Rhizomagastrodiae_C368-T01_good_119.780
SRR6049663Rhizomagastrodiae_C368-T01_good_115.890
SRR6049664Rhizomagastrodiae_C368-T10_good_119.080
SRR6049665Rhizomagastrodiae_C368-T10_good_119.080
SRP279888GastroGastrodia elata tuber 25.78
JuvenJuvenile tuber20.20
Mother_GastroMother tuber of Gastrodia elata 13.69
Mother_JuvenMother tuber of Juvenile 14.09