Detail information of GWHGAAEX017383/evm.TU.scaffold_80.206
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|147920653|ref|YP_685547.1| | 2.00E-174 | leucyl-tRNA synthetase [Methanocella arvoryzae MRE50] |
| KOG | KOG0437 | 0 | Leucyl-tRNA synthetase |
| nr | gi|672129650|ref|XP_008788336.1| | 0 | PREDICTED: leucine--tRNA ligase, cytoplasmic [Phoenix dactylifera] |
| trEMBL | tr|K3Z396|K3Z396_SETIT | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si021014m} |
| TAIR | AT1G09620 | 0 | ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000084 | 4224601 | 4233733 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017383
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00133.21 | tRNA-synt_1 | 23 | 106 | 2.10E-10 |
| PF00133.21 | tRNA-synt_1 | 184 | 754 | 1.50E-34 |
| PF08264.12 | Anticodon_1 | 794 | 925 | 1.60E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01869 | LARS, leuS | Aminoacyl-tRNA biosynthesis | map00970 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006429 | Biological Process | leucyl-tRNA aminoacylation |
| GO:0006418 | Biological Process | tRNA aminoacylation for protein translation |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004823 | Molecular Function | leucine-tRNA ligase activity |
| GO:0004812 | Molecular Function | aminoacyl-tRNA ligase activity |
| GO:0002161 | Molecular Function | aminoacyl-tRNA editing activity |
| GO:0000166 | Molecular Function | nucleotide binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 34.760 |
| SRR2545915 | Juvenile tuber | 31.880 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 22.720 |
| SRR5643514 | five period of Gastrodia elata | 20.240 | |
| SRR5643515 | five period of Gastrodia elata | 17.740 | |
| SRR5643524 | five period of Gastrodia elata | 18.750 | |
| SRR5643525 | five period of Gastrodia elata | 15.360 | |
| SRR5643528 | five period of Gastrodia elata | 14.240 | |
| SRR5643658 | five period of Gastrodia elata | 16.690 | |
| SRR5643659 | five period of Gastrodia elata | 24.870 | |
| SRR5643660 | five period of Gastrodia elata | 30.390 | |
| SRR5643661 | five period of Gastrodia elata | 23.820 | |
| SRR5643662 | five period of Gastrodia elata | 28.060 | |
| SRR5643663 | five period of Gastrodia elata | 27.510 | |
| SRR5643664 | five period of Gastrodia elata | 28.570 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 28.210 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 31.690 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 28.380 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 30.040 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 30.270 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 37.460 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 28.850 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 32.500 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 28.460 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 29.410 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 27.550 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 27.550 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 21.79 |
| Juven | Juvenile tuber | 19.01 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 16.50 | |
| Mother_Juven | Mother tuber of Juvenile | 11.73 |