Gene detail

Detail information of GWHGAAEX017388/evm.TU.scaffold_80.212

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG2953	3.00E-68	mRNA-binding protein Encore
nr	gi\|672126812\|ref\|XP_008786865.1\|	8.41E-98	PREDICTED: uncharacterized protein LOC103705051 [Phoenix dactylifera]
trEMBL	tr\|A5AMT9\|A5AMT9_VITVI	9.00E-90	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN73572.1}
TAIR	AT3G56680	3.00E-68	Single-stranded nucleic acid binding R3H protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000084	4276625	4282039	-

Transcript Sequence
>GWHTAAEX017388 CTATGATTTAATTATGGTCGTGGTTATGTGCATGATGAGATGCTTGAGTTGAGAACTTGATTAGTTGTGGATAAGGATGTATGTTTCATCAAGATGTTATAGGAGCAGTAAAAGGTAGAAGAATTAAGAATGCATTAATATAAAGAATCATAACTTGGTTAGTTGAGGCGGCTTAAACTTCAAAAAAGTTTGCAGTGTCTGATTTATCGAATGAGTTCTAGCAGTCGGAGGTGGAAATGTAGTAGCTTGACTCACAACTTAAGACGGCAGAAACTGAGCAAACAGTCCCATAAATAGGTCCATTGGTGAACCTCCCTCAGATGTGATAGGGTTTGAGAATTTCTTCGGAGTCTCAATATTTGTTACAGGGATTCAGGGAGTTTGTGTTCTATGCATATATCAGCGATACTTTAATTAGACATCATATATAAGGGTTTCTTATTATTTTTTAAAGTTTTTTTAGGTTTGACTGCTGAAATTTCTAATTTGCTTAAATTTTATTAATTCTGCTCTAATTCTAACATAAGTCAATGTGATGCATGTGTTTGGTAAAAGCTGAGCACCAAAATACCTAGAGACCTATTGCAGCCATTTCCATGGATTTATTTGTAGTAGGCATTTCTCAGTTCTTTTTAAGGAGCTGATTCAATCTGGGTTATAGTTGTCCGACTCTCCAAGGATGTACATTTTCTACCGATTCGACAAATTGCGTATTTGTCAAGATTATTTTTTTGCATCTAGATGAAAATAGGCCTTCCTCTTGTCTTTTTACCTTTCCAAGTAGATATCATTAAGGTATGGAGAAAACCTAATTCGAGGAAGTGATTAGAACTTGGAGGGAATGGCAGCCATATCCTGAACAGATTATAAAATTAAGTTTAAATATACTCTTTGAATTAGGTAATTTTTTTTACATAGCAAATAGTTTGTCGTGCCTAAAGTGGGGAAATCGTCTATGCTTGATTGCTTTATTAGTGGTTTGGTTTAGAGAAACTATGGTTTTCTGGGCATAGTTTTGCGCCCTTCTGTGATTGAAAGAACAAGAGTGCCTATGATGGCGGACATTGAGAGGGTTCTTAAGAATTGATTATGACTTGGGTTGAACTGAATTTTGGGAGAGCTAGTGGTAGGGGCTCACTGGGCTATCATCAGCAATGAGAATATATAGGTTGAATGCATAAAAACATCGCAACTTTGGTTGAATTGTCAATGTTATAGATATGTAGTTAGGATAGGTAGAGGGATTACTGGTTTGGGCTAATGTGAGTTTAGAAGAGTTTTGTAATGGGTAATGCGTGTAGTAGATGTTTGATTATGCTGAGGGATATTACTATTAACGGGGAAGGAGAAACAGAGGTACGTTGCTTTGAAAATGAGTTTACTTGCACCTTCCCAAATCCATTTAAAAAATCATTTTAAGTTAGAAAATGAGGTGGGTTCCACGAAATTCCTTAAGTGGGCCCATCTCATTTACTAATTTTTGGGATGAATTTGGGATTGTGTATTTCTCTCACGTAATGTTATGCTCTGAATGTTGTTTTATATATGCTTAATTTGATTTGTATTTATATAATAGTTTTGGCGGGGTTTAGAAAATTAAATTTCTCGTCAACTTTAAAATACAGTTAATGGAACACTCAGATCGTAAGAACAGTATCGTCATTGCAATTGCATTCTTGTGAATTTTGTTCTTGCTGACTGCTGTCATTGGCCATACCTGGGGGCACAACACCGGCAAAGTTCCTGCTTCAGTGTTGCTTTTTACATGGGCATGTGCGGTATCTTTGGCATTATACTAGCAAACTGTAGTGTGCATACTTACGTGGCTAAAATGTTGGGAAGTTTTTATGTTGTCCAGCGCCTGATAATGTTTGTTTTTACTGCAGTTTTGCGAATGGAGTTGGAAATTCAGCAGTTCATACAGAGTACAGTTCAATACCAATTTGAATTCCAGCATTTTCCCACTTCTTATCTTAGATGCGCAGCTCATCGTGTGGCTCAACACTATGGCCTGCAAACAATGTCAATTGATAATGTTAGAGTAATAGTCAGGAAAACCACTGAGACTAAATATCCATCCGTTCGTTTATCCGATATACCTGCAAAACAGCCTGAAAATGAGAAAGCTGGGCAGATTAAAATTGTTGTGCGACGGAAACCAAATGAAGCTTCCCTCTGTAGCGCATCAGGGCTGGGAAACAGCAGCTTGAGGACAGTGGAAGAGCGAATGGAAGAATATGACAAAGCACGCGCTCGTATATTTAGCAACTTTTCTGATTCTGCTTATGCAAGAAAAGCTTTTAGTGGAGATCAGAAAGAGGCAAGCTGGAATGGTACTGAAGGGTCTGAAAAGATTATTATTAAAGACACTGCCTCCAGAATTGCTATTTTCAGGGACCGGGAAAAAGATCGCAGTGATCCTGATTATGATCGGAGTTATGATCGGTATGCTTTGGGTTTTGCATCTTGCCCTATTTTTTCCATGGGAGTTTCCAATATTCGTCAGTCTTCTCATTTGATGTACGATGGAGCCTTTTCTCAGCTGACCTTCAGGCCACAAGTCCTTCCTAGCTTTAGTAGTTTTGGTGCAGCTGGGTGCAATCAAACCTGTCCAGGTGCTGTCTATATGCAATGGCCAACACCTGCTGTGATGTATGCACAGTCCTATGATCACTTCAGGAATGCAAAATTTCAGGCACCTTCTTACCCGCAGCCTCTGAGCCTCGAACATTTGCAGAACAGTTAGCAAGCCTATTTGTTCCTTTTTAGTGTTTTTTCTTTTATCTTTGGCAAAAAAAAAAAAATTTGCATGGAAAAATCTTTTGTGCAAATGACCTCTTTAATTCTAGTGCTGATTAATCTGCGAACTATATTCTGCTGATCATATATATTCATGGTTGATTTTTTATTTTTTTGAATTTCCAATGAAAGTATTTCCTTACAAATTCATTATTGTGCGTTGTTGTTATTCACAAATTTAAATTGTATCAAAAGCTAAATAAATATAAAAAATAATTTTGTTGTTTTA

Network for GWHGAAEX017388

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01424.21	R3H	40	90	1.10E-12
PF12752.6	SUZ	123	170	2.60E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	10.920
SRP064423	SRR2545915	Juvenile tuber	10.900
SRP108465	SRR5643513	five period of Gastrodia elata	7.610
	SRR5643514	five period of Gastrodia elata	9.450
	SRR5643515	five period of Gastrodia elata	9.890
	SRR5643524	five period of Gastrodia elata	9.470
	SRR5643525	five period of Gastrodia elata	7.160
	SRR5643528	five period of Gastrodia elata	11.220
	SRR5643658	five period of Gastrodia elata	8.230
	SRR5643659	five period of Gastrodia elata	8.860
	SRR5643660	five period of Gastrodia elata	8.910
	SRR5643661	five period of Gastrodia elata	8.410
	SRR5643662	five period of Gastrodia elata	8.860
	SRR5643663	five period of Gastrodia elata	7.760
	SRR5643664	five period of Gastrodia elata	8.250
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.980
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	10.630
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.350
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.320
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.810
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	12.940
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	10.990
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.110
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.910
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	11.930
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.220
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.220
SRP279888	Gastro	Gastrodia elata tuber	7.69
	Juven	Juvenile tuber	7.20
	Mother_Gastro	Mother tuber of Gastrodia elata	17.67
	Mother_Juven	Mother tuber of Juvenile	10.97