Detail information of GWHGAAEX017392/evm.TU.scaffold_80.216


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG17921.00E-46Reticulon
nrgi|743782390|ref|XP_010921131.1|2.04E-107PREDICTED: reticulon-like protein B16 [Elaeis guineensis]
Swissprottr|Q8GYH6|RTNLP_ARATH2.00E-71Reticulon-like protein B16
trEMBLtr|M0SD99|M0SD99_MUSAM4.00E-98Reticulon-like protein {ECO:0000256|RuleBase:RU210713}
TAIRAT4G236301.00E-46VIRB2-interacting protein 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008443064424316845-
Transcript Sequence

Network for GWHGAAEX017392

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02453.16Reticulon562096.40E-47
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.900
SRR2545915Juvenile tuber18.190
SRP108465SRR5643513five period of Gastrodia elata22.950
SRR5643514five period of Gastrodia elata19.520
SRR5643515five period of Gastrodia elata21.620
SRR5643524five period of Gastrodia elata17.060
SRR5643525five period of Gastrodia elata22.820
SRR5643528five period of Gastrodia elata22.850
SRR5643658five period of Gastrodia elata20.650
SRR5643659five period of Gastrodia elata20.190
SRR5643660five period of Gastrodia elata22.010
SRR5643661five period of Gastrodia elata22.200
SRR5643662five period of Gastrodia elata25.460
SRR5643663five period of Gastrodia elata24.030
SRR5643664five period of Gastrodia elata21.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_121.010
SRR6049655Rhizomagastrodiae_C368-T10_good_111.470
SRR6049656Rhizomagastrodiae_C368-T07_good_120.110
SRR6049657Rhizomagastrodiae_C368-T07_good_124.870
SRR6049658Rhizomagastrodiae_C368-T04_good_123.240
SRR6049659Rhizomagastrodiae_C368-T04_good_123.520
SRR6049660Rhizomagastrodiae_C368-T01_good_118.870
SRR6049661Rhizomagastrodiae_C368-T04_good_121.750
SRR6049662Rhizomagastrodiae_C368-T01_good_123.280
SRR6049663Rhizomagastrodiae_C368-T01_good_124.260
SRR6049664Rhizomagastrodiae_C368-T10_good_122.840
SRR6049665Rhizomagastrodiae_C368-T10_good_122.840
SRP279888GastroGastrodia elata tuber 20.58
JuvenJuvenile tuber21.62
Mother_GastroMother tuber of Gastrodia elata 24.63
Mother_JuvenMother tuber of Juvenile 22.38