Detail information of GWHGAAEX017393/evm.TU.scaffold_80.217


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|46445904|ref|YP_007269.1|3.00E-86superoxide dismutase (Mn) [Candidatus Protochlamydia amoebophila UWE25]
KOGKOG08762.00E-119Manganese superoxide dismutase
nrgi|743843212|ref|XP_010938005.1|6.05E-134PREDICTED: superoxide dismutase [Mn], mitochondrial [Elaeis guineensis]
Swissprottr|P11796|SODM_NICPL5.00E-126Superoxide dismutase [Mn], mitochondrial (Precursor)
trEMBLtr|K0A0L0|K0A0L0_ELAGV2.00E-134Superoxide dismutase {ECO:0000256|RuleBase:RU000414}
TAIRAT3G109202.00E-119manganese superoxide dismutase 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008443187414332489+
Transcript Sequence

Network for GWHGAAEX017393

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00081.21Sod_Fe_N371183.50E-34
PF02777.17Sod_Fe_C1282301.70E-34
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K04564SOD2 MAPK signaling pathway - fly map04013
FoxO signaling pathwaymap04068
Peroxisomemap04146
Longevity regulating pathwaymap04211
Longevity regulating pathway - wormmap04212
Longevity regulating pathway - multiple speciesmap04213

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0006801Biological Processsuperoxide metabolic process
GO:0004784Molecular Functionsuperoxide dismutase activity
GO:0046872Molecular Functionmetal ion binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms71.030
SRR2545915Juvenile tuber132.950
SRP108465SRR5643513five period of Gastrodia elata349.570
SRR5643514five period of Gastrodia elata539.730
SRR5643515five period of Gastrodia elata428.150
SRR5643524five period of Gastrodia elata548.650
SRR5643525five period of Gastrodia elata334.110
SRR5643528five period of Gastrodia elata367.030
SRR5643658five period of Gastrodia elata369.360
SRR5643659five period of Gastrodia elata221.390
SRR5643660five period of Gastrodia elata211.250
SRR5643661five period of Gastrodia elata209.370
SRR5643662five period of Gastrodia elata136.170
SRR5643663five period of Gastrodia elata188.160
SRR5643664five period of Gastrodia elata125.110
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1240.590
SRR6049655Rhizomagastrodiae_C368-T10_good_1270.700
SRR6049656Rhizomagastrodiae_C368-T07_good_1280.240
SRR6049657Rhizomagastrodiae_C368-T07_good_1181.100
SRR6049658Rhizomagastrodiae_C368-T04_good_1144.770
SRR6049659Rhizomagastrodiae_C368-T04_good_1123.300
SRR6049660Rhizomagastrodiae_C368-T01_good_1177.180
SRR6049661Rhizomagastrodiae_C368-T04_good_1168.610
SRR6049662Rhizomagastrodiae_C368-T01_good_1345.670
SRR6049663Rhizomagastrodiae_C368-T01_good_1233.790
SRR6049664Rhizomagastrodiae_C368-T10_good_1374.220
SRR6049665Rhizomagastrodiae_C368-T10_good_1374.220
SRP279888GastroGastrodia elata tuber 154.10
JuvenJuvenile tuber212.40
Mother_GastroMother tuber of Gastrodia elata 126.09
Mother_JuvenMother tuber of Juvenile 175.23