Detail information of GWHGAAEX017394/evm.TU.scaffold_80.218
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|307151765|ref|YP_003887149.1| | 9.00E-91 | N2N2-dimethylguanosine tRNA methyltransferase [Cyanothece sp. PCC 7822] |
| KOG | KOG1253 | 2.00E-163 | tRNA methyltransferase |
| nr | gi|672176484|ref|XP_008808315.1| | 0 | PREDICTED: tRNA (guanine(26)-N(2))-dimethyltransferase isoform X2 [Phoenix dactylifera] |
| Swissprot | tr|Q9LFU5|TRM1_ARATH | 2.00E-11 | Probable tRNA (guanine(26)-N(2))-dimethyltransferase 1 |
| trEMBL | tr|A5ACL3|A5ACL3_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CAN75521.1} |
| TAIR | AT3G56330 | 2.00E-163 | N2,N2-dimethylguanosine tRNA methyltransferase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000084 | 4320867 | 4356155 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017394
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02005.15 | TRM | 90 | 465 | 5.50E-59 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008033 | Biological Process | tRNA processing |
| GO:0004809 | Molecular Function | tRNA (guanine-N2-)-methyltransferase activity |
| GO:0003723 | Molecular Function | RNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.440 |
| SRR2545915 | Juvenile tuber | 3.580 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.460 |
| SRR5643514 | five period of Gastrodia elata | 3.410 | |
| SRR5643515 | five period of Gastrodia elata | 3.440 | |
| SRR5643524 | five period of Gastrodia elata | 3.880 | |
| SRR5643525 | five period of Gastrodia elata | 3.390 | |
| SRR5643528 | five period of Gastrodia elata | 3.010 | |
| SRR5643658 | five period of Gastrodia elata | 3.200 | |
| SRR5643659 | five period of Gastrodia elata | 3.340 | |
| SRR5643660 | five period of Gastrodia elata | 4.470 | |
| SRR5643661 | five period of Gastrodia elata | 3.570 | |
| SRR5643662 | five period of Gastrodia elata | 3.900 | |
| SRR5643663 | five period of Gastrodia elata | 3.760 | |
| SRR5643664 | five period of Gastrodia elata | 3.860 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.740 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.140 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.400 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.770 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.620 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 8.430 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.650 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.100 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.630 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.370 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.800 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.800 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.94 |
| Juven | Juvenile tuber | 4.06 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.95 | |
| Mother_Juven | Mother tuber of Juvenile | 6.05 |