Gene detail

Detail information of GWHGAAEX017396/evm.TU.scaffold_80.221

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2273	Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins
nr	gi\|719974759\|ref\|XP_010245755.1\|	PREDICTED: sorting nexin 1 [Nelumbo nucifera]
Swissprot	tr\|Q9FG38\|SNX1_ARATH	Sorting nexin 1
trEMBL	tr\|D7TJA3\|D7TJA3_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI30329.3}
TAIR	AT5G06140	sorting nexin 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000084	4405750	4421501	-

Transcript Sequence
>GWHTAAEX017396 CGTTACTTGGTTGTTGTATTTTAAATAATATTAGAAAATTTTAGTTTGTATTTTTATATTGAAGTAATGTTAAATTTAATAGGCATATATTTGAATGCAAAGTTTGTAATAAAATCTTTAGTACTTCTTTGCATTTACTATAAAATTTTTTATTAAATGCATTTGGGAGGAAGTGCTTCGGTGCTCATTTATTATGAAATGATGAAGTAATTACACAGTTTCTTAAATTCTTTTGTAAATCAATTAGATTGCACTGTAATTATATTATTTTACACTTAAATTTATTTATACCAAACAAACTTTAGGCTAATTGGACAACAAATAAATAACAGTAAGATATGCACACACACAATCGATGAACTAACAATTAAAAATGCAACGAACAAAGCCTTAATACATAGGGATGATGAATATTTTCGCTTGAGATTTGAAAGAAAATTTTATTGAATTTGGAAACGCTATTTTGACCGTAAGTGTGATCTCCTAAAAACTTTAATGGATGCCAACGAAGTCACCTAGTTATCTGCCGTGCCCCCTCCGCGCTTTGCTTCTGTACCCTCATCTCTCACAGTGATCTTCCATCACCTCGCTGCTCCGCCGCATTCCAGCTCCGTCGCAGCCTTCGTTATCTCTAGAAAGGGAAAGAAGACATGATTTCCACGCAGACGACATTCGCAGGGTCCTCTCCTTCCCAGAGCCCTAGATCTCCGTCGGGACAACCTTTTCTCTCCGTCTCTGTTACCGATCCGGTGAAATTGGGGAATGGTGTGCAAGCGTATGTGTCGTATAGAGTCATGACCAAGACCAACATGCCTGAATATCAGGGGGAAGAGAAGATTGTTATTAGGCGTTACAGTGACTTTGTTTGGTTACGTGATAAACTTGCAGACAAGTTCAAGGGAATTTTTATTCCACCTTTGCCTGAGAAGAGCGCTGTAGAGAAGTTCCGCTTCAGCGCCGAGTTCATTGAGATGAGACGTCAAGCTTTGGATATATTTATTAATCGGGTAGCGTCGCATATTGAACTCAAAAAAAGTGAGGATTTGAGAACTTTTTTGCAAGAAGACGAAGAGACAATGGAAAGGACAAGATCTCAAGAGATAACAATTTTCAAGAAGAAACCTTCAGAATTTATGCAGATATTTAAGGATGTACAATCAAAGGTAAGTGATGTTGTTTTGGGGAAAGAGAAGCCAGTTGAAGAGTCGACTCCTGAATACGAGAAATTGAAACAATACATTTTTGAGCTTGAAGATCACTTAACTGAGGCACAGAAGCAGGCTTTCCGACTAGTTAAAAGACACAGAGAGTTAGGACAGTCACTTGCTGATTTTGGAAAGGCAATCAAGCTTCTTGGTGCTTGTGAAGGAGAATCACTCGGAAAAGCATTTACTGAGCTTGGTTTTAGGTCTGAGATGATGTCTCTAAGACTACAGAAAGAGGCTCACAACCTTCTCATGAATTTTGAAGAGCCACTGAAAGACTATGTTCGTGCAGTGCAGTCTATTAAGGTGACAATGACGGACAGAGCCAATGCTTTCAGGCAGCACTATGAACTGGCTGAAACAATCAGGCTAAAGGAGATAAACCTCGATAAGCTGATGTTAATACGCTCTGATAGGGCGGGCGAAGCTGAGATCGAATTCAGAGAGCTGAAGGCGGATAGCGAGGAAGCTACCCGGAGATACGAGAGGATAGTGAAGGCGATGGGGGAAGAGCTGGGCCGCTTCCAGGAGCAGAAAACTGCAGAAATAGGGCTTGCTTTTCATGAATTTGCAAAGGGACAGTCCAAACTCTCCTGCGAGATTGCGGATGCCTGGAGAAGTCTCTTGCCTAAGCTCGGTGTTTCCTCTTAGCCGCCCCTCTTTATTTCTCGAATTCATTTGTTGTGATGATGCATACAGTTTTGTAATTTTATAAAAAAATTTAAAATTTTATTCACTTAAAAATTTAGAGAAGAAAAAGTGTTCTACTGCAATAATGGCAGCCTGCAGCTGCATATGCATTGTCGGTTAGCACTGCAATAACTATTTGAGTTTGCTACATTCTCAAAATTATAGAATACTATGTATAAGTTATAGCATGGTCACAATCATGCAGACAGTAAATTCAGCTTGACTATGCAATGCAGTATGTATATAGACTTATTTCCGTTTTAATTCTCATCGAAAAGCATTGATTTATTGTTAAACGATGTTCTGCGATACTTGACCATATTTGTTACTGATGTATTGGTATAATAATTCTATGAATTATACTAATCCGTACCTCCAAACAATAACTTTGAATTCTTTATCATGGGAGCATATGGATTTTCATAGACAAACTTGTGCAGTTAGCG

Network for GWHGAAEX017396

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00787.23	PX	24	138	1.10E-24
PF09325.9	Vps5	176	395	7.10E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17917	SNX1_2	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0035091	Molecular Function	phosphatidylinositol binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	39.010
SRP064423	SRR2545915	Juvenile tuber	41.590
SRP108465	SRR5643513	five period of Gastrodia elata	33.810
	SRR5643514	five period of Gastrodia elata	37.560
	SRR5643515	five period of Gastrodia elata	37.910
	SRR5643524	five period of Gastrodia elata	40.160
	SRR5643525	five period of Gastrodia elata	34.150
	SRR5643528	five period of Gastrodia elata	43.210
	SRR5643658	five period of Gastrodia elata	34.560
	SRR5643659	five period of Gastrodia elata	39.910
	SRR5643660	five period of Gastrodia elata	40.260
	SRR5643661	five period of Gastrodia elata	45.430
	SRR5643662	five period of Gastrodia elata	38.950
	SRR5643663	five period of Gastrodia elata	39.040
	SRR5643664	five period of Gastrodia elata	37.620
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	35.250
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	19.290
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	34.260
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	33.340
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	29.750
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	35.010
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	30.530
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	33.640
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	35.260
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	32.310
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	39.440
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	39.440
SRP279888	Gastro	Gastrodia elata tuber	32.98
	Juven	Juvenile tuber	39.28
	Mother_Gastro	Mother tuber of Gastrodia elata	84.10
	Mother_Juven	Mother tuber of Juvenile	91.71