Detail information of GWHGAAEX017401/evm.TU.scaffold_80.228


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG11900Polypyrimidine tract-binding protein
nrgi|743805287|ref|XP_010927400.1|0PREDICTED: polypyrimidine tract-binding protein homolog 3-like isoform X1 [Elaeis guineensis]
Swissprottr|Q6ICX4|PTBP3_ARATH0Polypyrimidine tract-binding protein homolog 3
trEMBLtr|M0SGW2|M0SGW2_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P22460_001}
TAIRAT1G431900polypyrimidine tract-binding protein 3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008445038904552141+
Transcript Sequence

Network for GWHGAAEX017401

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13893.5RRM_5901850.021
PF13893.5RRM_52213171.30E-28
PF00076.21RRM_13534171.30E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms11.150
SRR2545915Juvenile tuber12.190
SRP108465SRR5643513five period of Gastrodia elata8.330
SRR5643514five period of Gastrodia elata6.780
SRR5643515five period of Gastrodia elata6.840
SRR5643524five period of Gastrodia elata8.820
SRR5643525five period of Gastrodia elata9.480
SRR5643528five period of Gastrodia elata9.290
SRR5643658five period of Gastrodia elata8.100
SRR5643659five period of Gastrodia elata10.750
SRR5643660five period of Gastrodia elata12.550
SRR5643661five period of Gastrodia elata9.830
SRR5643662five period of Gastrodia elata11.610
SRR5643663five period of Gastrodia elata13.030
SRR5643664five period of Gastrodia elata13.070
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.830
SRR6049655Rhizomagastrodiae_C368-T10_good_15.760
SRR6049656Rhizomagastrodiae_C368-T07_good_17.920
SRR6049657Rhizomagastrodiae_C368-T07_good_110.190
SRR6049658Rhizomagastrodiae_C368-T04_good_112.420
SRR6049659Rhizomagastrodiae_C368-T04_good_111.020
SRR6049660Rhizomagastrodiae_C368-T01_good_19.950
SRR6049661Rhizomagastrodiae_C368-T04_good_19.590
SRR6049662Rhizomagastrodiae_C368-T01_good_18.360
SRR6049663Rhizomagastrodiae_C368-T01_good_19.080
SRR6049664Rhizomagastrodiae_C368-T10_good_19.740
SRR6049665Rhizomagastrodiae_C368-T10_good_19.740
SRP279888GastroGastrodia elata tuber 15.82
JuvenJuvenile tuber15.76
Mother_GastroMother tuber of Gastrodia elata 15.08
Mother_JuvenMother tuber of Juvenile 15.97