Detail information of GWHGAAEX017404/evm.TU.scaffold_80.231


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41976.00E-162FOG: PPR repeat
nrgi|743763525|ref|XP_010911952.1|0PREDICTED: pentatricopeptide repeat-containing protein At2g20540 [Elaeis guineensis]
Swissprottr|Q9SIL5|PP165_ARATH2.00E-162Pentatricopeptide repeat-containing protein At2g20540
trEMBLtr|M0VXA2|M0VXA2_HORVD0Uncharacterized protein {ECO:0000313|EnsemblPlants:MLOC_38137.1}
TAIRAT2G205406.00E-162mitochondrial editing factor 21

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008445564164558008+
Transcript Sequence

Network for GWHGAAEX017404

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module7

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01535.19PPR68960.00031
PF01535.19PPR1721992.20E-05
PF13041.5PPR_22012492.30E-10
PF13041.5PPR_23033523.20E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms3.550
SRR2545915Juvenile tuber5.940
SRP108465SRR5643513five period of Gastrodia elata18.700
SRR5643514five period of Gastrodia elata12.780
SRR5643515five period of Gastrodia elata11.860
SRR5643524five period of Gastrodia elata14.910
SRR5643525five period of Gastrodia elata19.830
SRR5643528five period of Gastrodia elata9.380
SRR5643658five period of Gastrodia elata7.650
SRR5643659five period of Gastrodia elata15.590
SRR5643660five period of Gastrodia elata15.830
SRR5643661five period of Gastrodia elata17.650
SRR5643662five period of Gastrodia elata13.410
SRR5643663five period of Gastrodia elata14.350
SRR5643664five period of Gastrodia elata16.260
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_111.890
SRR6049655Rhizomagastrodiae_C368-T10_good_19.240
SRR6049656Rhizomagastrodiae_C368-T07_good_111.900
SRR6049657Rhizomagastrodiae_C368-T07_good_113.700
SRR6049658Rhizomagastrodiae_C368-T04_good_110.560
SRR6049659Rhizomagastrodiae_C368-T04_good_19.730
SRR6049660Rhizomagastrodiae_C368-T01_good_110.720
SRR6049661Rhizomagastrodiae_C368-T04_good_112.860
SRR6049662Rhizomagastrodiae_C368-T01_good_112.760
SRR6049663Rhizomagastrodiae_C368-T01_good_111.060
SRR6049664Rhizomagastrodiae_C368-T10_good_19.250
SRR6049665Rhizomagastrodiae_C368-T10_good_19.250
SRP279888GastroGastrodia elata tuber 14.03
JuvenJuvenile tuber54.02
Mother_GastroMother tuber of Gastrodia elata 23.58
Mother_JuvenMother tuber of Juvenile 50.02