Detail information of GWHGAAEX017408/evm.TU.scaffold_80.238


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|312130871|ref|YP_003998211.1|0ribonucleoside-diphosphate reductase subunit alpha [Leadbetterella byssophila DSM 17132]
KOGKOG11120Ribonucleotide reductase, alpha subunit
nrgi|695074086|ref|XP_009384231.1|0PREDICTED: ribonucleoside-diphosphate reductase large subunit-like isoform X1 [Musa acuminata subsp. malaccensis]
Swissprottr|Q9SJ20|RIR1_ARATH0Ribonucleoside-diphosphate reductase large subunit {ECO:0000303|PubMed:10542051}
trEMBLtr|M0RTG4|M0RTG4_MUSAM0Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}
TAIRAT2G217900ribonucleotide reductase 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008446096974620508+
Transcript Sequence

Network for GWHGAAEX017408

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03477.15ATP-cone1897.50E-16
PF00317.20Ribonuc_red_lgN1422125.00E-23
PF02867.14Ribonuc_red_lgC2167571.10E-185
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10807RRM1 Metabolic pathways map01100
Purine metabolismmap00230
Pyrimidine metabolismmap00240
Glutathione metabolismmap00480
Drug metabolism - other enzymesmap00983

Gene Ontology

GO term OntologyName
GO:0006260Biological ProcessDNA replication
GO:0055114Biological Processoxidation-reduction process
GO:0005524Molecular FunctionATP binding
GO:0004748Molecular Functionribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms5.960
SRR2545915Juvenile tuber8.920
SRP108465SRR5643513five period of Gastrodia elata11.780
SRR5643514five period of Gastrodia elata15.500
SRR5643515five period of Gastrodia elata9.350
SRR5643524five period of Gastrodia elata10.990
SRR5643525five period of Gastrodia elata5.190
SRR5643528five period of Gastrodia elata4.820
SRR5643658five period of Gastrodia elata6.170
SRR5643659five period of Gastrodia elata11.160
SRR5643660five period of Gastrodia elata13.050
SRR5643661five period of Gastrodia elata11.650
SRR5643662five period of Gastrodia elata11.610
SRR5643663five period of Gastrodia elata11.640
SRR5643664five period of Gastrodia elata9.940
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.530
SRR6049655Rhizomagastrodiae_C368-T10_good_117.660
SRR6049656Rhizomagastrodiae_C368-T07_good_121.350
SRR6049657Rhizomagastrodiae_C368-T07_good_111.440
SRR6049658Rhizomagastrodiae_C368-T04_good_18.550
SRR6049659Rhizomagastrodiae_C368-T04_good_16.500
SRR6049660Rhizomagastrodiae_C368-T01_good_115.210
SRR6049661Rhizomagastrodiae_C368-T04_good_114.100
SRR6049662Rhizomagastrodiae_C368-T01_good_132.510
SRR6049663Rhizomagastrodiae_C368-T01_good_119.630
SRR6049664Rhizomagastrodiae_C368-T10_good_126.230
SRR6049665Rhizomagastrodiae_C368-T10_good_126.230
SRP279888GastroGastrodia elata tuber 10.42
JuvenJuvenile tuber10.53
Mother_GastroMother tuber of Gastrodia elata 3.63
Mother_JuvenMother tuber of Juvenile 2.25