Gene detail

Detail information of GWHGAAEX017414/evm.TU.scaffold_81.4

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|187735468\|ref\|YP_001877580.1\|	2.00E-08	RNP-1 like RNA-binding protein [Akkermansia muciniphila ATCC BAA-835]
nr	gi\|672142048\|ref\|XP_008794874.1\|	0	PREDICTED: nucleolin [Phoenix dactylifera]
Swissprot	tr\|P28644\|ROC1_SPIOL	3.00E-08	28 kDa ribonucleoprotein, chloroplastic
trEMBL	tr\|B9SKE9\|B9SKE9_RICCO	0	RNA binding protein, putative {ECO:0000313\|EMBL:EEF35870.1}
TAIR	AT2G44720	1.00E-44	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000087	352864	368890	-

Transcript Sequence
>GWHTAAEX017414 GAAAATTGCTGTTATTGTAAAAAGTTTGCCCGTCTATTTATTTTAGCTTGCATCGATAGGGTCTGTTTCCAGGACAAAACTAGGGTTTTCACTTGCGGCGCAGGGCTAGGGTTTCGCTTCTTTTGCATGCCATTACTCTTGTCTGAATTAGGTCGTCGAATCGTTAGCTCATCTCTTTTTGCTAGATCCAGCGATGCCTCCCCGTGTTGTTAAGAAGGGATCCAATACCGTCGCCTCTGTTTCTGGCCCCGGGAAAAAAGCTGTTGCGAAAGCTACGAAGGCTGTCACCAGCCTACTGCAAAACCAATCGGATGCAACCAAGGATTCGGTGAATGTCTTAGAGCCGGAGGCGAAGGAGGTTCTTGCCGAAAAAATCGCGGAAGCAAACTTGGAGAAGAAGCCAGAGGACATTGTGAAGGCTGTAAATGGATCTGCTGGTCCAGAGGGTTCAAAAGATATTTCTGAGGAGGATGATAAAGGTGAACGTCTAGAATTGGATGACAATGAACCAGAGTATGAGCCGGAAGAGGAAGCCACTATTGACTATGATGAGAGGATTGATGATGATGATGGCCAAGAGGTGGATGAAGGTGATGATGAAGTTGAAGAAGATGATGTGGTTGAAGAAGAAGAAGGTGACCTGGTTGAGGAGGTTGAGGAGGGTGGTGAAGATGTTGAGGAGGAAGGGGACCATGTAAATGTCGAAGAACATGAGGTTGATGGAGAGGAAGAAGAGCATCATGAAGTATTTAAGGAGCGTCGCAAGCGGAAAGAATTTGAAGTTTTTGTCGGAGGTTTGGACAAGGATGCTACAGAAGATGATCTTCGAAAAGTTTTCAAAGAAGTTGGTGAAATAACTGAAGTAAGGCTCCTGATGAATCCTCACACAAAGAAGAATAAAGGCTTTGCTTTTTTGCGTTTTGCTACTGTAGACCAAGCAAAACGTGCTGTTACAGAATTCAAGAATCCGGTTATAAATGGTAAACAATGTGGTGTTGCCCAAAGTCAAGATAATGACACCCTTTTCCTGGGGAATATCTGCAAGACCTGGACAAAGGAGCATTTGAAGGAGAAGTTGAAGAATTATGGTATTGATAACATTGAGGATCTGGTTTTAGTCGAAGATAACAGTAATGAGGGGATGAATCGCGGGTTTGCTTTCTTGGAATTTTCTTCTCGTTCAGAAGCCATGGATGCTTATAGACGATTGCAAAAGAGGGATGTCGTGTTTGGAGTTGATCGTTCTGCGAAGGTTGCTTTTGCAGATTCATTTATTGAGCCTGATGATGAAATTATGGCACAGGTAAAAACTGTTTTTCTTGATGGAATTCCTCCTGCATGGGATGAAGAACGAGTCAAGGAGCATACCAAGAAATTTGGTAAGGTTGAAAAAATTGAACTTGCTCGTAACATGCCAGCTGCCAAGAGAAAGGATTTTGGATTTGTTACTTTTGATGCCCATGAGGCTGCCGTGGCATGTGCCGAAGGTCTTAACAATGCAGAACTTGGTGAAGGGGACAATAAGGTGAAAATCAGATCTAGGCTGTCAAGACCTCTTCAGAGAGGTCGAGGAAAACGTGTTGCCCGAGGGGATTTTAGGATTAGTCATCCCGCTACTCGAGATACTCGAACAACTTTAAGCCGTGCTGCTGCTCACAGGCTACCCTTAAGAGCATCGAGGGTAAGCATTGCTCGTAGTGCACCAGTTGGTGTTCGTGGTGTACTAGTTGGAGGTCGTGTGCCAAAGAGACCCATAGGGTTAAGGGACAGACGACCTGCACCAGCAATATCTGAGAGAGCAAGGCACTTGGTACCACCAGAGAAGTCCTACAGTAGAAGACCACCGATTCCAGTATACCCTAAGAGTATTTCTAAGAGGGACTATGTTAGACGTGATGAAATTGCTCCCAGAAGTCGATCCATTACTGAATATGGCTCAAGAATTCCAACTGAGAGACGATCTTCTTATGGTGATGATTATTCTAGGGGAGAATATTCAGATATCCCTCCTCGGAGTTTATCTCGTTCTACTGAAAGGAGACCCTATGTTGATGAAGTGTATGGCCGAAAGATTGACCGAACTCTTCCAGCTTACAGAGAAGGACGCGGCCGAGATTATGACTCTCTTTCTGGTTCCAAACGTCCATATTCTGCTCTGGATGAGATGAATCCTCGTTTTGCTGATGCAAGCATGAGACAATCAAGAGCAAGATTAGAGTATGGTGCTAGTGGTGGTTCTGCTCAGTATGAAGATAGCTATAGTGAAAGGTTGGGACGGTCTCATATTGGATATGGTAGCAGCCGCAATTCTATCTCTGGACGTGATTCTCATGGGCTTTATGGAGGCCGCCATGGAACAACCTACACTAGCGGTTCTGCTGGCGGAAGTGATGTTGATGGGCTGTACTCATCATCTGGCTACAGTAGCAGTTATCTATCCCGCAGTTCTGATGTTGGAGGTAGCTCTTACTCCTCAATGTACTCTGGCCGTGGCTTAAGTGGTTCCAGCTATTTGCGTGGCAGTGGCTCTGGGTCATACTATTGAGATTTGCATCTGAAGGATGGTGTAGAGTTTTCACTGCCTGAAGCTTCTGGATATCTTACCTTCACAAATGAAATAGTATGTTATTGCCAGCCTGTAGAACTTTTTTTGCACTGAAAAGCCATCTTGGACTTGAGAACTTTTAAACTTTGGTTTATAGAGATCTCTTAACAAGAATATCTTGGAGAGTTGATTATGCTTGTAAGGATACCTAAGTTTTTCAGTTTGCTAGATCATGAGACTAGTGTGGTTATGTATTGCATTGCTTATTATTTCTGTTCCTACTATGATCTCCACATGATGGACAATGAGATATGCATTTCAAGCTTTTCTATGAGCTGCAATTTTGTGCTAAAGCATTGAGATGCTGCATATTACAGAATGTTAAAAGAGCTAAGGTATAAGCTTGATTTTATGGCATAATGGTATGATAAGCTATGATGGAGCTAGGGGCTCTCGCCCCACACTATACAAGTATCTTTGATATGCAAATATAGAAAGTTCACCCGCTCAAACTTTAGGGATCTCTTTCATTCCGTCTTTCTTAAAAATACAGACCTCCATTATTTATGGTAAACATTGATATTATGAATGTCAGGTTTTTGTATTTGAGCTATATTTATTTGGAAATGCTAAAACCCAGAGGCTCTGAATACTCTAGAATGTGAAAAGTTTCTGGTATAAGCTTGATTTTTAACAATATGGTAAGTTCTGGTGAAACCCAGGTGGTGATAGAGAAAAGCTCTCGTAGTCCTGCCATTCCTTTTTTATTGTGGTATGATTTCCAATAAGATGGACAACATGCCTTTTGCTCAAGGATTTATTACACATGAGAAACTTATTTAAAAATCTTACAATTTTGATGTAATGGAAATTTGAATACTATATGGAAAGTTTGAAAATCTTACAGTTTTTTGTATATTTCTATACAAGCAATTCATTTAACCAGATATTGGCTTTGATCTGCTTTCATTGAAACAAAATATTTGTTTGGATCCTGTTTGTTTAAAATTTGTATGGCTAAATTCGCTTTTGAGAAAAACAAGAAATTTACTCAACAATATCAATGGACACAAAGTTATAGGGTAAAATAAGACAACACAAGAGACTAGTTAGTTCGATTGGGAATGTGCCCACAGTACGATCTGCAGAAGTTCTTTTGCTATTTCAAGGTTATAGTTTACTGTATTTTGGGATATTGTGTTTTGCATTGATTTGTGTGATCCCTAAGTAATTAAGCCTTCTGTATTTAAAGCAGAATTATATTGACTAGGAGGAAAGAAAGAAGTCTCTAGAATTGATGAAAATGATCACTCGTAGGCAGGATTTACTTTGTTGAATAAATACTATTGAATTACCGAGTTCTCAAGTCTGTTGGAAGTTCTTCAAGAGGAAATGAGTCGTGAACAGGATAACCTTCGCTTTTTGTTGTTGTTGTTGCTAATTTTACTTTTTTGTTAAGTGCCATGTGTTCAACGGATGGTCTATGGTGATATTCAAGAACAACTTCTAAAAGGTAGATGAGCATATGACTGCGATTTTAGTGTTTCAGATGAGTACATGGTTTGGTTAGGATTATTTCTAGGTGAATTTTTGCTGTATTTTTATCTTTGAACTCAGACAAAAGATTTGTAACTGTGAATTTTTAAGGCTGAGTTGTCTTTCTTAGAACATCAAAACATTGCAATCTTTCTCCTTAGATAATCTTGCACTGGCATATATGGTGTTGATGAAGAGGAATTACATGTTTAGAATGAAAACAAAGGTGTGATTAGAATATATAGATCTTCCTGTCGTAGTTAACTAAGAATGTGTGATTTAAGTGACATTTGATGTTCCATATAAGCCAACATTCTTACTGAAGGCTTTCATGTTTAGTGTGTTTCTAAATTTCCAGATATTGAGTGACGATAAAAATGAAATGGAGTTTAAAGGCGAGGACAAAGTTAAGTCTCTTTGTATAATGAGCACTTTTCTGTATTTAATGAGCAAATGTTCTTAAGATGACATCAACATAAAAGCTAATTTTATAGAAATAAGTAAAATAAAAGAATGGCAGAATTTCATTTCTTGATACATTTACTGGAGAGAGACTAGCAATTAGTCCAACCCAAACTTATAGCAAGACAAGTAAGCTTTGATGAACACCAAGAAGTTATGGCCATTGGTATGAAAAGATGTCAATTCAATGTAGACTCTAACGTATGCGTAGAAGAAGAGCTGTCACTAGTGCATTCCTGACCTGTTGAGCAAGCACATCTCAATGACAATGCAGCAGAAAAGATACATATCTATATATATATACATATAATTCAATTGAGATGTACTTCGAAGTCATTATTTACTTCATAGTTGTACAATTATTGTGTATTTAGCATGCGAATATTTGATTTTGTAACTTATACAATGTATCTGTAAATGCCAGTATAAGACAATTTAATGAGTGTCGTAGCAAGCACTTTTGTCTGCAGTTTATATAATAGATAATGTACTCTGCTATAATTTTTATATTAACTTGCTGTCTGTGAGGCAGCTAACCAAATAGGGAGCTATTGCCTGCTTAGCTTCTATTATATTAAGTTGTATAAAAAAAAGC

Network for GWHGAAEX017414

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	197	265	5.70E-18
PF00076.21	RRM_1	277	343	7.90E-08
PF00076.21	RRM_1	374	439	5.00E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	63.830
SRP064423	SRR2545915	Juvenile tuber	71.140
SRP108465	SRR5643513	five period of Gastrodia elata	67.040
	SRR5643514	five period of Gastrodia elata	52.220
	SRR5643515	five period of Gastrodia elata	57.610
	SRR5643524	five period of Gastrodia elata	52.630
	SRR5643525	five period of Gastrodia elata	33.770
	SRR5643528	five period of Gastrodia elata	37.340
	SRR5643658	five period of Gastrodia elata	22.150
	SRR5643659	five period of Gastrodia elata	76.300
	SRR5643660	five period of Gastrodia elata	85.590
	SRR5643661	five period of Gastrodia elata	81.290
	SRR5643662	five period of Gastrodia elata	72.180
	SRR5643663	five period of Gastrodia elata	76.920
	SRR5643664	five period of Gastrodia elata	73.980
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	69.310
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	60.190
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	62.410
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	73.730
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	68.010
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	81.670
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	75.470
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	71.290
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	61.870
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	65.520
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	59.210
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	59.210
SRP279888	Gastro	Gastrodia elata tuber	65.79
	Juven	Juvenile tuber	111.10
	Mother_Gastro	Mother tuber of Gastrodia elata	44.01
	Mother_Juven	Mother tuber of Juvenile	72.56