Gene detail

Detail information of GWHGAAEX017420/evm.TU.scaffold_81.10

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG4197	FOG: PPR repeat
nr	gi\|743876509\|ref\|XP_010907599.1\|	PREDICTED: pentatricopeptide repeat-containing protein At1g80270, mitochondrial [Elaeis guineensis]
Swissprot	tr\|Q9C977\|PP135_ARATH	Pentatricopeptide repeat-containing protein At1g80270, mitochondrial (Precursor)
trEMBL	tr\|M0TSH1\|M0TSH1_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr8P21680_001}
TAIR	AT1G80270	PENTATRICOPEPTIDE REPEAT 596

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000087	578923	594655	+

Transcript Sequence
>GWHTAAEX017420 CAATTTTTTGTTCCTTGCCTGAAGATCATGTAGATGTATGGATCGCTCCGTTGTACGGTCACGTCATGCAGAGTCCACGCACACAATTATTACCGTTGATCAATAGATCAATGGTGATAGACAAAAACTTTAATAAATAAATCGCGGCCTTGCTTCTCTCTGTCCTCGATGGTCGCACTCCTAAACCCACCCTAAACCCTAAACACTCCCTCACGCAGGCGCCCGTTTGAGCAGCTCCAAACTTCATAGTTCATTCTTTAGTTGTTTCCACCTCTCCGATTCCAGTGTGTGAGTGTGTTTTCGAAACAATGGAAATACTTTGGAGTTTTTATTCCGTCTTATCTCTCTGCTGGGTTTAGGGTTCTAGCATACTATTCTTTTTCCTGTACTTGCATCATCTAGCTGATCCGAGTGGTTCCTCAAAGGGTCTTTAAATACCTTGCAGCTCTCGTTCCCTTAATTGGTACGTACTCTCGACAGTCATGTGGGCGATTCGTCGAGCTTCAAATACAATCAGGAACCCTAGGGCCTGCATTGCTGTTAGTAACTCCAACTATACTATTTGTTCAGCACCTAGTAATTTTAAATTGAAAAATGAACAAGGTTACCATTCAAAAGAGCATAGGCGTAATGAATGTCTTCATAAAAAAAGACCCATTTCTCTTGGAGTCATGCACTATGGGGAGGCTTTAGTTTGGGGCCGAAATCTTTCCTCACAGGTTCGAGCTAACTCTAATGACAACGATGATGACTTGGAGGATGGGTTTTCTGAACTTGAAATGTCTTCAGAAACTGATAAAACTAAAGAACCTCTGGATGAGGAACTTGCGTCAGATTCTAAAACTGATGGCACTGAGGAGGATTGTAATGATGCTATCAAGGATACACCTGGGTTGTCTGACAATGAAGGAGATTATGGTAAAAAAGAACTCGTCAGGAAGAATCGTGGCTCTCCGCTTTTCATGGTTATATTAAATGCTATCCGCTCTAATTTCAACAACACCCTTGACAAATGGGTAGAAGAAGGAAATCCTCTAGGACGAGGTGAAATTGCACTGGCAATGATGAATCTAAGAAAGCGTCACATGTATGGAAAAGCTTTGCAGTTTTTGGAATGGTTGGATTCGAATAAACGAATCGAACTCACAGAGCGTGATTACGCATCGCGCGTTGATCTTATAGCCAAGGTTCAGGGTCTCCGGAAGGCAGAGGTGTATGTCGAAGAGATCCCGAAGTCCTTTCGAGGCGAGATTGTTTACCGGACTCTTCTTGCTAACTGTGTCGCTCTCGCCAATGTTAAGAAATCAGAGCAAGTGTTCAACAAAATCCGCGATCTCGGCTTCCCCATCACAGCCTTCTCATGCAACCAATTGTTGCTGCTTTATAAAAGGATGGACCGGAAGAAGATTGGGGACGTCCTAAAGATGATGGAGAAGGAGGATGTGAAGCCGTCCCTCTTCACCTACAAGCTCTTGGTGGACACAAAGGGCCGCATGAAGGACGTGGACGGCATGGAGGACGTCATTGCGGCGATGAAGGCCGAAGGCATGGCACCTGATTGGTCAATGCTCGCTCTGATTGTGCAGCACTACATCTTCGCCGGCTTCATCGAGAAGGCGGAGACTACCATGAAGGCGATTGAAGGGGACGATATAAGCAAGAACCGCCCTGCTTGCAAGACTCTCCTCCCGCTTTATGCGGCCCTCGGGAAGGCAGATGATGTTGGGAGGATTTGGAAAGTCTGCCAGCATAGTCCCCGCCTTGAGGAATGTTCAGCTGCGATTGAGGCGTGGGGCCAGCTTGGCAATGTCGAAGAAGCTGAGAGGGTCTTTGAGAACATGATGAAGTCGTTCAAGAAGCTTTCTTCCAAGTACTACAATGTGCTTCTGAAGGTTTATGCCAACCACAAGCTTCTGTCGAAGGGAAAGGAGCTGGCGAAAAGGATGTCGGATGATGGGTGCAAGATTGGCCCCCTGACATGGGATAATCTAGTGAAGCTCTACGTGGAGGCCGGAGATGTCGAGAAAGCCAACTCTATATTGCAGAAGGCTTCGGAGCAGAATCCGGCGAAGCCGCTGTATTCGACCCACCTTTACTTGCTGGAGAAGTATGCTGAGAAGGGAGACATTCACAAGGCCGAGAAGATGTTCAACAAACTGAGGCAGAGCGGGTATGTGGGCAGATTAAGGCAGTATCAGCTGCTGCTTCAGGCTTATGTGAAGGCTAAGACGCCAGCATATGGGTTCAGAGAAAGGTTGAAGGCTGATAATGTCTTTCCCAATAAGGCTCTTCTCGCACAGCTGAATGCTGTCGATGCCTTTGGGAAGTCTGAGATTTCAGAGTTGCTCGATTAGGGGAAACTTTTGTGCTGCAGGCTCAGCAGAATCAATCATCTGTTTTTTGTTTCTTTAAGAATTTGATGTTTGGTCTAATAGTTTAATGAATTTGCTATCATGTTTCCTCATTTCTATTATTGTAATTTGACAGTGGCTTTACCGTCACTTTCTCTGATTTTATATTTGGTTTTCTGCTGTTTTGATGATTTGATTGCGATGAAGATTTATGCTTGATTAACACTGAGAAATCGAACCAAACTGATATACTTGCTCCAAATATGCAAATAAAGAAGAGTATTTGC

Network for GWHGAAEX017420

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13812.5	PPR_3	278	336	0.00016
PF01535.19	PPR	432	455	0.05
PF01535.19	PPR	465	493	0.043
PF01535.19	PPR	499	522	0.89
PF01535.19	PPR	539	563	0.095

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	57.780
SRP064423	SRR2545915	Juvenile tuber	56.340
SRP108465	SRR5643513	five period of Gastrodia elata	54.720
	SRR5643514	five period of Gastrodia elata	52.400
	SRR5643515	five period of Gastrodia elata	38.680
	SRR5643524	five period of Gastrodia elata	39.890
	SRR5643525	five period of Gastrodia elata	10.220
	SRR5643528	five period of Gastrodia elata	6.630
	SRR5643658	five period of Gastrodia elata	6.020
	SRR5643659	five period of Gastrodia elata	59.740
	SRR5643660	five period of Gastrodia elata	88.440
	SRR5643661	five period of Gastrodia elata	77.430
	SRR5643662	five period of Gastrodia elata	66.240
	SRR5643663	five period of Gastrodia elata	62.370
	SRR5643664	five period of Gastrodia elata	71.740
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	82.390
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	64.530
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	85.530
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	90.750
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	82.820
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	86.400
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	104.350
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	92.920
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	105.240
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	112.140
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	85.380
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	85.380
SRP279888	Gastro	Gastrodia elata tuber	76.86
	Juven	Juvenile tuber	68.98
	Mother_Gastro	Mother tuber of Gastrodia elata	10.47
	Mother_Juven	Mother tuber of Juvenile	19.60