Detail information of GWHGAAEX017424/evm.TU.scaffold_81.18


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428771133|ref|YP_007162923.1|0membrane protease FtsH catalytic subunit [Cyanobacterium aponinum PCC 10605]
KOGKOG07310AAA+-type ATPase containing the peptidase M41 domain
nrgi|643728895|gb|KDP36832.1|0hypothetical protein JCGZ_08123 [Jatropha curcas]
Swissprottr|Q5Z974|FTSH1_ORYSJ0ATP-dependent zinc metalloprotease FTSH 1, chloroplastic (Precursor)
trEMBLtr|A0A067KL39|A0A067KL39_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP36832.1}
TAIRAT5G422700FtsH extracellular protease family

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000087745968788479+
Transcript Sequence

Network for GWHGAAEX017424

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00004.28AAA2964274.70E-43
PF01434.17Peptidase_M414897029.00E-80
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006508Biological Processproteolysis
GO:0004222Molecular Functionmetalloendopeptidase activity
GO:0005524Molecular FunctionATP binding
GO:0016020Cellular Componentmembrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms8.140
SRR2545915Juvenile tuber12.590
SRP108465SRR5643513five period of Gastrodia elata15.210
SRR5643514five period of Gastrodia elata21.440
SRR5643515five period of Gastrodia elata18.570
SRR5643524five period of Gastrodia elata21.210
SRR5643525five period of Gastrodia elata11.380
SRR5643528five period of Gastrodia elata12.910
SRR5643658five period of Gastrodia elata15.480
SRR5643659five period of Gastrodia elata13.980
SRR5643660five period of Gastrodia elata15.880
SRR5643661five period of Gastrodia elata15.590
SRR5643662five period of Gastrodia elata13.290
SRR5643663five period of Gastrodia elata11.860
SRR5643664five period of Gastrodia elata12.670
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.960
SRR6049655Rhizomagastrodiae_C368-T10_good_122.170
SRR6049656Rhizomagastrodiae_C368-T07_good_120.650
SRR6049657Rhizomagastrodiae_C368-T07_good_120.240
SRR6049658Rhizomagastrodiae_C368-T04_good_120.020
SRR6049659Rhizomagastrodiae_C368-T04_good_120.350
SRR6049660Rhizomagastrodiae_C368-T01_good_121.750
SRR6049661Rhizomagastrodiae_C368-T04_good_121.970
SRR6049662Rhizomagastrodiae_C368-T01_good_122.340
SRR6049663Rhizomagastrodiae_C368-T01_good_126.230
SRR6049664Rhizomagastrodiae_C368-T10_good_126.050
SRR6049665Rhizomagastrodiae_C368-T10_good_126.050
SRP279888GastroGastrodia elata tuber 15.81
JuvenJuvenile tuber24.72
Mother_GastroMother tuber of Gastrodia elata 13.84
Mother_JuvenMother tuber of Juvenile 20.31