Detail information of GWHGAAEX017429/evm.TU.scaffold_81.23
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|296243088|ref|YP_003650575.1| | 1.00E-15 | group 1 glycosyltransferase [Thermosphaera aggregans DSM 11486] |
| KOG | KOG1387 | 4.00E-120 | Glycosyltransferase |
| nr | gi|672125037|ref|XP_008785927.1| | 0 | PREDICTED: GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase [Phoenix dactylifera] |
| Swissprot | tr|Q9XEE9|ALG11_ARATH | 0 | GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase |
| trEMBL | tr|A0A087H3H6|A0A087H3H6_ARAAL | 0 | Uncharacterized protein {ECO:0000313|EMBL:KFK36678.1} |
| TAIR | 7296469 | 4.00E-120 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000087 | 887280 | 902791 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX017429
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF15924.4 | ALG11_N | 35 | 239 | 2.20E-83 |
| PF00534.19 | Glycos_transf_1 | 264 | 435 | 7.20E-25 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT4 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03844 | ALG11 | Metabolic pathways | map01100 |
| N-Glycan biosynthesis | map00510 | ||
| Various types of N-glycan biosynthesis | map00513 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0004377 | Molecular Function | GDP-Man:Man3GlcNAc2-PP-Dol alpha-1,2-mannosyltransferase activity |
| GO:0005789 | Cellular Component | endoplasmic reticulum membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 81.070 |
| SRR2545915 | Juvenile tuber | 78.620 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 28.870 |
| SRR5643514 | five period of Gastrodia elata | 37.510 | |
| SRR5643515 | five period of Gastrodia elata | 32.160 | |
| SRR5643524 | five period of Gastrodia elata | 37.890 | |
| SRR5643525 | five period of Gastrodia elata | 48.500 | |
| SRR5643528 | five period of Gastrodia elata | 50.380 | |
| SRR5643658 | five period of Gastrodia elata | 58.410 | |
| SRR5643659 | five period of Gastrodia elata | 35.350 | |
| SRR5643660 | five period of Gastrodia elata | 34.550 | |
| SRR5643661 | five period of Gastrodia elata | 31.010 | |
| SRR5643662 | five period of Gastrodia elata | 28.160 | |
| SRR5643663 | five period of Gastrodia elata | 34.560 | |
| SRR5643664 | five period of Gastrodia elata | 29.910 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 44.450 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 43.630 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 40.510 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 43.890 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 52.600 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 57.110 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 43.590 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 45.810 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 40.120 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 42.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 40.900 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 40.900 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 29.19 |
| Juven | Juvenile tuber | 24.29 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 34.88 | |
| Mother_Juven | Mother tuber of Juvenile | 22.95 |