Detail information of GWHGAAEX017435/evm.TU.scaffold_81.29


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG41970FOG: PPR repeat
nrgi|672172132|ref|XP_008806150.1|0PREDICTED: pentatricopeptide repeat-containing protein At1g20300, mitochondrial [Phoenix dactylifera]
Swissprottr|Q9LN22|PPR54_ARATH0Pentatricopeptide repeat-containing protein At1g20300, mitochondrial (Precursor)
trEMBLtr|M0RZZ6|M0RZZ6_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P14880_001}
TAIRAT1G203000Pentatricopeptide repeat (PPR) superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000087942589944213+
Transcript Sequence

Network for GWHGAAEX017435

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13041.5PPR_21662112.90E-09
PF13041.5PPR_22322818.10E-15
PF13041.5PPR_23023511.20E-12
PF01535.19PPR3804090.044
PF13041.5PPR_24114591.90E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms6.080
SRR2545915Juvenile tuber5.540
SRP108465SRR5643513five period of Gastrodia elata9.580
SRR5643514five period of Gastrodia elata8.390
SRR5643515five period of Gastrodia elata7.170
SRR5643524five period of Gastrodia elata7.910
SRR5643525five period of Gastrodia elata7.420
SRR5643528five period of Gastrodia elata6.300
SRR5643658five period of Gastrodia elata5.200
SRR5643659five period of Gastrodia elata14.050
SRR5643660five period of Gastrodia elata12.400
SRR5643661five period of Gastrodia elata13.000
SRR5643662five period of Gastrodia elata14.120
SRR5643663five period of Gastrodia elata11.090
SRR5643664five period of Gastrodia elata13.660
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_113.150
SRR6049655Rhizomagastrodiae_C368-T10_good_114.100
SRR6049656Rhizomagastrodiae_C368-T07_good_112.430
SRR6049657Rhizomagastrodiae_C368-T07_good_111.110
SRR6049658Rhizomagastrodiae_C368-T04_good_113.650
SRR6049659Rhizomagastrodiae_C368-T04_good_111.270
SRR6049660Rhizomagastrodiae_C368-T01_good_114.280
SRR6049661Rhizomagastrodiae_C368-T04_good_112.290
SRR6049662Rhizomagastrodiae_C368-T01_good_117.440
SRR6049663Rhizomagastrodiae_C368-T01_good_115.150
SRR6049664Rhizomagastrodiae_C368-T10_good_114.940
SRR6049665Rhizomagastrodiae_C368-T10_good_114.940
SRP279888GastroGastrodia elata tuber 13.34
JuvenJuvenile tuber8.08
Mother_GastroMother tuber of Gastrodia elata 10.66
Mother_JuvenMother tuber of Juvenile 8.55