Detail information of GWHGAAEX017436/evm.TU.scaffold_81.30


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|294507190|ref|YP_003571248.1|1.00E-76ribosomal large subunit pseudouridine synthase D [Salinibacter ruber M8]
KOGKOG19194.00E-160RNA pseudouridylate synthases
nrgi|743833125|ref|XP_010935174.1|0PREDICTED: RNA pseudouridine synthase 2, chloroplastic isoform X1 [Elaeis guineensis]
Swissprottr|Q5Z8P2|PUS2_ORYSJ5.00E-164RNA pseudouridine synthase 2, chloroplastic (Precursor)
trEMBLtr|J3MHP7|J3MHP7_ORYBR1.00E-168Uncharacterized protein {ECO:0000313|EnsemblPlants:OB06G35410.1}
TAIRAT1G760504.00E-160Pseudouridine synthase family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000087944827983024-
Transcript Sequence

Network for GWHGAAEX017436

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01479.24S4721191.00E-07
PF00849.21PseudoU_synth_21463439.20E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0001522Biological Processpseudouridine synthesis
GO:0009451Biological ProcessRNA modification
GO:0003723Molecular FunctionRNA binding
GO:0009982Molecular Functionpseudouridine synthase activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms9.960
SRR2545915Juvenile tuber10.630
SRP108465SRR5643513five period of Gastrodia elata8.350
SRR5643514five period of Gastrodia elata7.460
SRR5643515five period of Gastrodia elata9.300
SRR5643524five period of Gastrodia elata9.280
SRR5643525five period of Gastrodia elata13.490
SRR5643528five period of Gastrodia elata10.340
SRR5643658five period of Gastrodia elata13.310
SRR5643659five period of Gastrodia elata8.830
SRR5643660five period of Gastrodia elata10.460
SRR5643661five period of Gastrodia elata9.430
SRR5643662five period of Gastrodia elata11.570
SRR5643663five period of Gastrodia elata11.350
SRR5643664five period of Gastrodia elata10.560
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_111.300
SRR6049655Rhizomagastrodiae_C368-T10_good_112.860
SRR6049656Rhizomagastrodiae_C368-T07_good_110.300
SRR6049657Rhizomagastrodiae_C368-T07_good_110.190
SRR6049658Rhizomagastrodiae_C368-T04_good_110.970
SRR6049659Rhizomagastrodiae_C368-T04_good_110.930
SRR6049660Rhizomagastrodiae_C368-T01_good_18.820
SRR6049661Rhizomagastrodiae_C368-T04_good_110.000
SRR6049662Rhizomagastrodiae_C368-T01_good_19.000
SRR6049663Rhizomagastrodiae_C368-T01_good_110.430
SRR6049664Rhizomagastrodiae_C368-T10_good_19.070
SRR6049665Rhizomagastrodiae_C368-T10_good_19.070
SRP279888GastroGastrodia elata tuber 12.38
JuvenJuvenile tuber19.02
Mother_GastroMother tuber of Gastrodia elata 8.32
Mother_JuvenMother tuber of Juvenile 13.14