Gene detail

Detail information of GWHGAAEX017437/evm.TU.scaffold_81.31

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|427719544\|ref\|YP_007067538.1\|	2.00E-12	RNP-1 like RNA-binding protein [Calothrix sp. PCC 7507]
KOG	KOG0147	7.00E-135	Transcriptional coactivator CAPER (RRM superfamily)
nr	gi\|590684183\|ref\|XP_007041782.1\|	2.01E-179	Splicing factor isoform 1 [Theobroma cacao]
Swissprot	tr\|Q9FVQ1\|NUCL1_ARATH	5.00E-14	Nucleolin 1
trEMBL	tr\|A0A061E5R8\|A0A061E5R8_THECC	7.00E-180	Splicing factor isoform 1 {ECO:0000313\|EMBL:EOX97613.1}
TAIR	AT5G09880	7.00E-135	Splicing factor, CC1-like

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000087	1022977	1070574	+

Transcript Sequence
>GWHTAAEX017437 GTTTTTATTTAGAAAATTATGCATGAGGTACGCTTCGCAGAGCTTATTTTTACCTCGCATTTTTCTTTCGAGACCTCTGTTTTCTCTGCTTGAGCTTCTCTAGGGTTCGTTCTAACTGGTTCTCCTGGCGACGGCTTGATGGATTTCGACGAGTATGAGTACTTGGAAAAGACCGTTGAGAATCTGGACTCTGCAAATGGGCGTAGTGCGGAGAGATCCGAAAAGGATCGAAGCCGAAGTTCAAAACACCGCGACGATGACCATCACCGATCAAAGCGGGCCAAGTTGGATGGCGAAGGTGATGGACACAGGGAGAGGGAGTCGTCGAGGCACGGCGAGAATGATCGTCATCGGAGAGACAGAGAATATAAAGAAGATAAGAACGGAAAGGGGAGTGACAGGGACAGAAAAAGGGATAGAGATAGGGAGAGTGACCGGGCCGTGGACCGAGAACGGGATCCGCACAGACGTAGCAGCAGCCGTTCGGAGAGGCGTGGTGATGATGAGCGAAATCGACACATGGAAAGGAACAGGGAGAGGGAGCCTTTGAGGGACATCAGGGATAGAGACCATCGGGATTCCAGGCGCAGAGAGAAGAAAGATGATGCCACGGAGCTTGAGGTTGATCCTGAGCGAGATCAGCGAACTGTATTTGCTTATCAGATTTGCTTAAAGGCTGATGAAAGAGATGTGTATGAGTTTTTCTCAAGGGCTGGAAAGGTGCGTGATGTTCGTCTCATAATGGATCGTAATTCAAGGCGTTCCAAGGGTGTCGGGTACATTGAATTTTATGATGCCATGTCAGTTCCAATGGCTATTGCTCTCTCAGGTCAGCTGCTTCTTGGTCAACCTGTAATGGTTAAACCATCCGAAGCAGAGAAGAACTTGGTGCAGTCGACTGTGACTTCAGCAGGAGCTGGTGGCCTAAGTGGACCTTATTCTGGTGGGGCTAGAAAGCTGTATGTGGGTAATCTTCACTTCAATATGACAGAAGATCAACTACGGCAGGTTTTTGAGCCATTTGGTGCTGTGGAACTTGTTCAATTGCCTCTTGATCTTGAAACTGGGCATTGCAAAGGATTTGGTTTTGTTCAGTTTGTTCGTCTTGAAGATGCAAAAGCTGCTCAGAGTCTTAATGGACAGCTAGAGATTGCTGGAAGAACAATAAAGGTATCAGCCATGACAGATCAGACAGGCATGCAAGATGTTGGTGCAAATGCTAATGACCTTGATGATGATGATGGCGGGGGCTTGTCTTTAAATGCACGATCTAGAGCTCTTTTGATGCAGAAATTGGATCGAAGTGGCACGACTACCAATGCTGGTGCTCTAGTTACTCCTGTCAGTACTCCGCTCTTACCTGTGCCAACAGCATCCGTTCTTGGTGCTCCTCCATTAAATCCTCTACTGCCTTCAACCATGCCCACACTTGCAGGCATACCAGCTCCTGCATTGGCATTTGCTTCAACGACCACTCAATCCGTTGATAACATCGGGGTTCCAAGTGAATGTTTGCTGCTGAAGAACATGTTTGACCCTAATGTGGAGGTTGGTTTTTTTATATTTGTAACAACTTTCCCCACTTTCATGTATCCATTTATGCATTATTTTTGAACTATACCAAATTAGCAATGATTTGTGCATTTAAATGCATTTATTGTAGAATGGGCATTATGACAATGCATTGAAGGATATGCTTGTTTGCTTGCAACTGTTGATACCTATATGCACTATTACATGACAATGCATTGCGCCGCATGTGTGCACTCCCAATCATTCATTTATGTGCGCACGTGCTGCTGCATTTATGCGGGCATATTAGTGTACAGATGTGTGTACATTTATATGTTATAACGTCTTGTGCAATGAAACATGCAGCACATGCATAAAGATATTTAATGAAGCTTGGCTCATTCATGATGATACACGAGTAACTTCTTCAAACTGTGCATGCATGCAAGTGTGCATAAGCATGCTTGTGCAGATACCTTCTGCGGTCTACCTGATTTTCTGCATTTATATCTATCATATCAATATGCAAGTTTTTTATGATGTTGTGCTTAATTATATTGGTCCGAGCATTTTTGTTTCGGTAGATTCTTGTGCCTTATGATTCAAGGAATTATGTGTGTATTCATTCCAGTCTGAATCAGATTTTGACTTGGATATTAAAGAAGATGTGCAAGAAGAGTGCTCGAAGTTTGGTACTGTGAAGCATATTTACGTGGAAAAAAATAGTCAGGGTCTCGTCTATCTGCGCTTTGGAAATGCAACTGAAGCCATGAATGCACAGCGTGCACTTCATGGAAGGTGGTTTGCCGGAAAGATGATTACAGCATCCTTCATGATTCCTCAGAACTATGAAGCAAAATTTCCCAAGTGATTGTCGGTGGTGCTGGATGCCGGTTAACTATAATGTTTGATCATTGTGTCAGCCCTGCACATTCTTTTTCCGTGTTGTGTAGCAGGCAGGAAGGCTCATCATTTCAATTCTTTCAGAGTTAAGTCTATTTATAGCCTTGATAACAGCATTGCTAAGAGAGTATCAGCAGTGCCTCTCCTCTCTGTGCACTCGTTATTTAAGCTTTCTGAGAATATATATATTTTTTCATAGATTATGTATGAAAGCTGTTGACCTATTAGCCATACTATACTGCATTTTTCATTTTTAAGCTGTGGAAAATTTAGAAGCGGGTGAATGTTTCTTGTAATTTGCGTGACTTTCCTATAGGGCATACAGTGACTATTTGGGGTTTTGAATATTTCTCTTCATCGAAACTCCTGTAGCCAATGGTTTACATAAGTCATTAATGGCCATTTCATTAGGGTTAACTATTCTTAAGAGTCATTAGTAGACCCAAAAGCATAGATAACTATTCCTAAGAGCGTTTGAATGTATTTTTTCTTTTATTTGTTGTTTTTGAATATATAGAACTGAAATAGGTATAATTCATTGCCCAGATATATGGAACCATCATAATATTTCTTGTTATTAAAGAGGATATTCTACCATAAAAGTATATTCCTAAGATTAAGTGGTGGTTTA

Network for GWHGAAEX017437

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	180	238	5.80E-09
PF00076.21	RRM_1	274	344	1.00E-20
PF15519.5	RBM39linker	364	470	8.10E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006397	Biological Process	mRNA processing
GO:0003676	Molecular Function	nucleic acid binding
GO:0003723	Molecular Function	RNA binding
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	34.300
SRP064423	SRR2545915	Juvenile tuber	34.930
SRP108465	SRR5643513	five period of Gastrodia elata	37.270
	SRR5643514	five period of Gastrodia elata	29.580
	SRR5643515	five period of Gastrodia elata	31.710
	SRR5643524	five period of Gastrodia elata	33.160
	SRR5643525	five period of Gastrodia elata	28.700
	SRR5643528	five period of Gastrodia elata	26.010
	SRR5643658	five period of Gastrodia elata	29.660
	SRR5643659	five period of Gastrodia elata	38.590
	SRR5643660	five period of Gastrodia elata	38.340
	SRR5643661	five period of Gastrodia elata	37.340
	SRR5643662	five period of Gastrodia elata	38.380
	SRR5643663	five period of Gastrodia elata	36.190
	SRR5643664	five period of Gastrodia elata	38.030
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	42.150
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	28.520
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	37.770
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	51.700
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	48.960
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	62.310
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	49.180
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	47.880
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	37.990
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	44.270
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	34.300
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	34.300
SRP279888	Gastro	Gastrodia elata tuber	27.50
	Juven	Juvenile tuber	34.51
	Mother_Gastro	Mother tuber of Gastrodia elata	32.08
	Mother_Juven	Mother tuber of Juvenile	27.58