Gene detail

Detail information of GWHGAAEX017438/evm.TU.scaffold_81.32

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|297739024\|emb\|CBI28513.3\|	1.49E-107	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q9ZVX2\|AMS_ARATH	4.00E-64	Transcription factor ABORTED MICROSPORES
trEMBL	tr\|M4CCS3\|M4CCS3_BRARP	6.00E-107	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Bra002004.1-P}
TAIR	AT2G16910	7.00E-65	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000087	1081127	1084208	-

Transcript Sequence
>GWHTAAEX017438 AGAGGGATGATATCCATGGCCGAAGCTTTGAGGCCTCTTGTAGTTGCCAATGCTTGGGATTATTGTATTCTGTGGAAGCTGTCTCATGACAACAGAGCTTTGGAGTGGATTGGGTGCTGCTGCGGGGGAAGAGTGTTTCGGTGTGCAGATAATTCAAGAGAGGATCAGCAGTATTACTGCAGAGATGCCTCTTTCCCACACCAGAGAACAAGAGCTTGCGAGGATCTCTCAGAGTTCCCTCTATCCATTCCAATGGACGATTCCTTGACTTTTCTCCCTTCTTTCAGGAATTATGCACAAGTTTTGGTATCAAGCCAGCCTTCTTGGCAATGCAATCTGATCGACTCATCTGATTCGCTGGATGTTGCCAAGACAAGGGTCTTGATTCCGATTCCTGCTGGAGGTCTGGTGGAGCTCTTCGCCTGGAATCACATTGGCGAGGATCCGCACACGGTGGACTTCATTGTCGGCCAATTCAGCATATCCGGCTACGAAGCGGCGATCAACAGCGGCCATGAGTATATACCGGACGGTGCTCCGGAGCTCCCATGGGACGTTCCAGAGGACCAATTCCGCCAATACAACCCCTCCTACGGCTTCTTGGATGCGTACGAGTGCGCTCCGTTGACGGCCGACAGGGACGGGGCGTCGGGCTTCGACGGGAGCGATCAAGGGGAGGAGGAGGAGGAGGAGATGAGGCAGATTGGCCGCGGCGGGAAGAGGCACCACTCCAAGAACTTGGTCGCCGAGAGGAAGCGGAGGAAGAAGCTCAACGACCGCCTCTACGCTCTCCGCGCGCTCGTCCCGAACATCACCAAGATGGATAGGGCTTCGATACTCGGAGATGCCATAGAGTATGTGATCAAGCTGCAGAAGCAAATCAAGGAGCTGCAGGATGAGCTAGAGGAGAACCTTGTTTCCGCGGACGCCGACGAAGCCACCAAACAGATGGGAAGCAACAACAACAGCGTTTGCCTGATAGAGGCCTCCCACCCCAATGCTGCTGATTCTAAGACCTCGCCTGAGACCTTCAATCACAGCTGCGAGCATGCCGGGGTGGACGACAAAGGGCCGCAAATGGAGCCCCATGTTGAGGTGCGTCCAGTGGAAGGCAATGAGTTCTTCCTGAAGATTTTCTGCGAGCAAAGGCCGGGCGGATTCGTGCGGCTAATGGAGGCAATGAGCTCGCTCGGGTTGGAAGTCACCAATGCAAATGTCACCACCTACAAAGAGCTTGTGCTAAATGTATTCAGGGTACAGAAGAGGGATAAGGATGGGGTGCAGGCGGAGCAGGTGAGGGATTCATTGCTGGAAGTGACTAAAGACACGGCTGCCGGAGGATGGCCGGAGATGACCGCCGGCATTCGTCTCAACCTTCGTCAGCACGTAGCTTTAACTAGTTAGTCAATGGGGGCACGGTTATGTTCTCA

Network for GWHGAAEX017438

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14215.5	bHLH-MYC_N	6	154	5.20E-14
PF00010.25	HLH	246	289	3.40E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	Molecular Function	protein dimerization activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.000
SRP064423	SRR2545915	Juvenile tuber	0.000
SRP108465	SRR5643513	five period of Gastrodia elata	0.000
	SRR5643514	five period of Gastrodia elata	0.000
	SRR5643515	five period of Gastrodia elata	0.000
	SRR5643524	five period of Gastrodia elata	0.000
	SRR5643525	five period of Gastrodia elata	0.060
	SRR5643528	five period of Gastrodia elata	0.120
	SRR5643658	five period of Gastrodia elata	0.040
	SRR5643659	five period of Gastrodia elata	0.000
	SRR5643660	five period of Gastrodia elata	0.000
	SRR5643661	five period of Gastrodia elata	0.050
	SRR5643662	five period of Gastrodia elata	0.000
	SRR5643663	five period of Gastrodia elata	0.120
	SRR5643664	five period of Gastrodia elata	0.000
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.000
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.000
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.000
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.000
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.080
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.000
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.000
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.000
SRP279888	Gastro	Gastrodia elata tuber	0.31
	Juven	Juvenile tuber	0.00
	Mother_Gastro	Mother tuber of Gastrodia elata	0.02
	Mother_Juven	Mother tuber of Juvenile	0.00