Detail information of GWHGAAEX017441/evm.TU.scaffold_81.35


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG25905.00E-20RNA-binding protein LARP/SRO9 and related La domain proteins
nrgi|720032152|ref|XP_010266026.1|1.26E-50PREDICTED: la-related protein 1C-like isoform X2 [Nelumbo nucifera]
Swissprottr|Q94K80|LRP1C_ARATH2.00E-29La-related protein 1C
trEMBLtr|M5VVT5|M5VVT5_PRUPE7.00E-50Uncharacterized protein {ECO:0000313|EMBL:EMJ05519.1}
TAIRSPAC1527.035.00E-20Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000008711009011116710+
Transcript Sequence

Network for GWHGAAEX017441

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05383.16La3013557.90E-22
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms25.600
SRR2545915Juvenile tuber17.470
SRP108465SRR5643513five period of Gastrodia elata11.770
SRR5643514five period of Gastrodia elata14.840
SRR5643515five period of Gastrodia elata10.910
SRR5643524five period of Gastrodia elata11.500
SRR5643525five period of Gastrodia elata8.960
SRR5643528five period of Gastrodia elata5.740
SRR5643658five period of Gastrodia elata6.140
SRR5643659five period of Gastrodia elata13.400
SRR5643660five period of Gastrodia elata17.960
SRR5643661five period of Gastrodia elata15.950
SRR5643662five period of Gastrodia elata17.380
SRR5643663five period of Gastrodia elata16.000
SRR5643664five period of Gastrodia elata16.460
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_113.130
SRR6049655Rhizomagastrodiae_C368-T10_good_117.560
SRR6049656Rhizomagastrodiae_C368-T07_good_114.070
SRR6049657Rhizomagastrodiae_C368-T07_good_115.330
SRR6049658Rhizomagastrodiae_C368-T04_good_113.760
SRR6049659Rhizomagastrodiae_C368-T04_good_111.090
SRR6049660Rhizomagastrodiae_C368-T01_good_115.020
SRR6049661Rhizomagastrodiae_C368-T04_good_112.830
SRR6049662Rhizomagastrodiae_C368-T01_good_114.110
SRR6049663Rhizomagastrodiae_C368-T01_good_111.380
SRR6049664Rhizomagastrodiae_C368-T10_good_113.280
SRR6049665Rhizomagastrodiae_C368-T10_good_113.280
SRP279888GastroGastrodia elata tuber 16.57
JuvenJuvenile tuber33.24
Mother_GastroMother tuber of Gastrodia elata 10.23
Mother_JuvenMother tuber of Juvenile 14.72